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2012
K. S. da Cunha, Pereira, M. G., Gonçalves, L. S. A., Berilli, A. P. C. G., de Oliveira, E. C., Ramos, H. C. C., and Júnior, A. Tdo Amaral, Full-sib reciprocal recurrent selection in the maize populations Cimmyt and Piranão, vol. 11, pp. 3398-3408, 2012.
Berilli AP, Pereira MG, Goncalves LS, da Cunha KS, et al. (2011). Use of molecular markers in reciprocal recurrent selection of maize increases heterosis effects. Genet. Mol. Res. 10: 2589-2596. http://dx.doi.org/10.4238/2011.October.25.6 PMid:22057955   Bernardo R (2008). Molecular markers and selection for complex traits in plants: learning from the last 20 years. Crop Sci. 48: 1649-1664. http://dx.doi.org/10.2135/cropsci2008.03.0131   Comstock RE, Robinson HF and Harvey PH (1949). A breeding procedure designed to make maximum use of both general and specific combining ability. Agron. J. 41: 360-367. http://dx.doi.org/10.2134/agronj1949.00021962004100080006x   Daher RF, Pereira MG, Pereira AV and Amaral Júnior AT (2002). Genetic divergence among Elephantgrass cultivars accessed by RAPD markers in composite samples. Sci. Agric. 59: 623-627. http://dx.doi.org/10.1590/S0103-90162002000400001   Doyle JJ and Doyle JL (1990). Isolation of plant DNA from fresh tissue. Focus 12: 13-15.   Fan XM, Zhang YD, Liu L, Chen HM, et al. (2010). Screening tropical germplasm by temperate inbred testers. Maydica 55: 55-63.   FAO (Food and Agriculture Organization of the United Nations) (2011). The agricultural production. Available at [http://www.faostat.fao.org]. Accessed April 22, 2011.   Gabriel APC (2006). Seleção Recorrente Recíproca em Famílias de Irmãos Completos em Milho (Zea mays L.) Assistida por Marcadores Moleculares. Master's thesis, Universidade Estadual do Norte Fluminense Darcy Ribeiro, Campos dos Goytacazes.   Gabriel APC (2009). Seleção Recorrente Recíproca de Famílias de Irmãos Completos em Milho Comum (Zea mays L.) Monitorada por Marcadores Moleculares: Avanço de Gerações e Avaliação de Progresso Genético. Master's thesis, Universidade Estadual do Norte Fluminense Darcy Ribeiro, Campos dos Goytacazes.   Goodman MM (2005). Broadening the U.S. maize germplasm base. Maydica 50: 203-214.   Hallauer AR and Miranda Filho JB (1988). Quantitative Genetics in Maize Breeding. 2nd edn. Iowa State University Press, Ames. PMid:3244349 PMCid:365608   Hallauer AR, Carena MJ and Miranda Filho JB (2009). Quantitative Genetics in Maize Breeding. Springer, New York.   Hartings H, Berardo N, Mazzinelli GF, Valoti P, et al. (2008). Assessment of genetic diversity and relationships among maize (Zea mays L.) Italian landraces by morphological traits and AFLP profiling. Theor. Appl. Genet. 117: 831-842. http://dx.doi.org/10.1007/s00122-008-0823-2 PMid:18584146   Lynch M and Walsh B (1998). Genetics and Analysis of Quantitative Traits. Sinauer Associates, Sunderland.   Mikel MA and Dudley JW (2006). Evolution of North American dent corn from public to proprietary germplasm. Crop Sci. 46: 1193-1205. http://dx.doi.org/10.2135/cropsci2005.10-0371   Reif JC, Fischer S, Schrag TA, Lamkey KR, et al. (2010). Broadening the genetic base of European maize heterotic pools with US Cornbelt germplasm using field and molecular marker data. Theor. Appl. Genet. 120: 301-310. http://dx.doi.org/10.1007/s00122-009-1055-9 PMid:19436986   Romay MC, Ordás B, Revilla P and Ordás A (2011). Three cycles of full-sib reciprocal recurrent selection in two Spanish maize populations. Crop Sci. 51: 1016-1022. http://dx.doi.org/10.2135/cropsci2010.06.0365   Santos FS (2005). Seleção Recorrente entre Famílias de Meios-Irmãos da População UNB-2U de Milho Pipoca (Zea mays L.). Doctoral thesis, Universidade Estadual do Norte Fluminense Darcy Ribeiro, Campos dos Goytacazes.   Smith JSC, Duvick DN, Smith OS, Cooper M, et al. (2004). Changer in pedigree backgrounds of Pioneer brand maize hybrids widely grown from 1930 to 1999. Crop Sci. 44: 1935-1946. http://dx.doi.org/10.2135/cropsci2004.1935   Souza CL Jr, Barrios SCL and Moro GV (2010). Performance of maize single-crosses developed from populations improved by a modified reciprocal recurrent selection. Sci. Agric. 67: 198-205. http://dx.doi.org/10.1590/S0103-90162010000200011   Springer NM and Stupar RM (2007). Allelic variation and heterosis in maize: how do two halves make more than a whole? Genome Res. 17: 264-275. http://dx.doi.org/10.1101/gr.5347007 PMid:17255553   Tardin FD, Pereira MG, Gabriel APC, Amaral Júnior AT, et al. (2007). Selection index and molecular markers in reciprocal recurrent selection in maize. Crop Breed. Appl. Biotechnol. 7: 225-233.   Williams JG, Kubelik AR, Livak KJ, Rafalski JA, et al. (1990). DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res. 18: 6531-6535. http://dx.doi.org/10.1093/nar/18.22.6531 PMid:1979162 PMCid:332606
H. C. C. Ramos, Pereira, M. G., Gonçalves, L. S. A., Berilli, A. P. C. G., Pinto, F. O., and Ribeiro, E. H., Multivariate analysis to determine the genetic distance among backcross papaya (Carica papaya) progenies, vol. 11, pp. 1280-1295, 2012.
Bertan I, Carvalho FIF, Oliveira AC, Benin G, et al. (2009). Morphological, pedigree, and molecular distances and their association with hybrid wheat performance. Pesq. Agropec. Bras. 44: 155-163. http://dx.doi.org/10.1590/S0100-204X2009000200007   Crossa J and Franco J (2004). Statistical methods for classifying genotypes. Euphytica 137: 19-37. http://dx.doi.org/10.1023/B:EUPH.0000040500.86428.e8   Cruz CD (2008). Programa GENES: Diversidade Genética. Universidade Federal de Viçosa, Viçosa.   Daher RF, Pereira MG, Tupinambá EA, Amaral Júnior AT, et al. (2002). Assessment of coconut tree genetic divergence by compound sample RAPD marker analysis. Crop Breed. Appl. Biotechnol. 3: 431-438.   Doyle JJ and Doyle JL (1990). Isolation of plant DNA from fresh tissue. Focus 12: 13-15.   Eustice M, Yu Q, Lai CW, Hou S, et al. (2008). Development and application of microsatellite markers for genomic analysis of papaya. Tree Genet. Genomes 4: 333-341. http://dx.doi.org/10.1007/s11295-007-0112-2   Fonseca RM, Lopes R, Barros WS, Lopes MTG, et al. (2008). Morphologic Characterization and genetic diversity of Capsicum chinense Jacq. accessions along the upper Rio Negro - Amazonas. Crop Breed. Appl. Biotechnol. 8: 187-194.   Franco F, Crossa J, Ribaut JM, Betran J, et al. (2001). A method for combining molecular markers and phenotypic attributes for classifying plant genotypes. Theor. Appl. Genet. 103: 944-952. http://dx.doi.org/10.1007/s001220100641   Gonçalves LS, Rodrigues R, Amaral AT Jr, Karasawa M, et al. (2008). Comparison of multivariate statistical algorithms to cluster tomato heirloom accessions. Genet. Mol. Res. 7: 1289-1297. http://dx.doi.org/10.4238/vol7-4gmr526 PMid:19065764   Gower JC (1971). A General coefficient of similarity and some of its properties. Biometrics 27: 857-871. http://dx.doi.org/10.2307/2528823   Jobin-Decor MP, Graham GC, Henr RJ and Drew RA (1997). RAPD and isozyme analysis of genetic relationships between Carica papaya and wild relatives. Genet. Resour. Crop Evol. 44: 471-477. http://dx.doi.org/10.1023/A:1008644901727   Kim MS, Moore PH, Zee F, Fitch MM, et al. (2002). Genetic diversity of Carica papaya as revealed by AFLP markers. Genome 45: 503-512. http://dx.doi.org/10.1139/g02-012 PMid:12033619   Kumar S, Nei M, Dudley J and Tamura K (2009). MEGA: A biologist-centric software for evolutionary analysis of DNA and protein sequences. Brief. Bioinform. 9: 299-306. http://dx.doi.org/10.1093/bib/bbn017 PMid:18417537 PMCid:2562624   Kyndt T, Romeijn-Peeters E, Van Droogenbroeck B, Romero-Motochi JP, et al. (2005). Species relationships in the genus Vasconcellea (Caricaceae) based on molecular and morphological evidence. Am. J. Bot. 92: 1033-1044. http://dx.doi.org/10.3732/ajb.92.6.1033 PMid:21652488   Lefebvre V, Goffinet B, Chauvet JC, Caromel B, et al. (2001). Evaluation of genetic distances between pepper inbred lines for cultivar protection purposes: comparison of AFLP, RAPD and phenotypic data. Theor. Appl. Genet. 103: 741-750. http://dx.doi.org/10.1007/s001220051705   Mantel N (1967). The detection of disease clustering and a generalized regression approach. Cancer Res. 27: 209-220. PMid:6018555   Marić S, Bolarić S, Martinčić J, Pejić I, et al. (2004). Genetic diversity of hexaploid wheat cultivars estimated by RAPD markers, morphological traits and coefficients of parentage. Plant Breed. 123: 366-369. http://dx.doi.org/10.1111/j.1439-0523.2004.00956.x   Mattos LA, Amorim EP, Amorim VBO, Cohen KO, et al. (2010). Agronomical and molecular characterization of banana germoplasm. Pesq. Agropec. Bras. 45: 146-154. http://dx.doi.org/10.1590/S0100-204X2010000200005   Ming R, Yu Q and Moore PH (2007). Sex determination in papaya. Semin. Cell Dev. Biol. 18: 401-408. http://dx.doi.org/10.1016/j.semcdb.2006.11.013 PMid:17353137   Mohammadi SA and Prasanna BM (2003). Analysis of genetic diversity in crop plants - Salient statistical tools and considerations. Crop Sci. 43: 1235-1248. http://dx.doi.org/10.2135/cropsci2003.1235   Ocampo J, D'Eeckenbrugge GC, Bruyère S, Bellaire LL, et al. (2006). Organization of morphological and genetic diversity of Caribbean and Venezuelan papaya germplasma. Fruit 61: 25-37. http://dx.doi.org/10.1051/fruits:2006003   Oliveira EJ, Silva AS, Carvalho FM, Santos LF, et al. (2010). Polymorphic microsatellite marker set for Carica papaya L. and its use in molecular-assisted selection. Euphytica 173: 279-287. http://dx.doi.org/10.1007/s10681-010-0150-y   Parasnis AS, Ramakrishna W, Chowdari KV, Gupta VS, et al. (1999). Microsatellite (GATA) n reveals sex-specific differences in papaya. Theor. Appl. Genet. 99: 1047-1052. http://dx.doi.org/10.1007/s001220051413   Peakall R and Smouse P (2009). GenAlEx Tutorials-Part 1: Introduction to Population Genetic Analysis. Australian National University, Australia. PMCid:2690036   R Development Core Team (2006). A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna.   Reif JC, Melchinger AE and Frisch M (2005). Genetical and mathematical properties of similarity and dissimilarity coefficients applied in plant breeding and seed bank management. Crop Sci. 45: 1-7. http://dx.doi.org/10.2135/cropsci2005.0001   Rocha MC, Gonçalves LSA, Rodrigues R, Silva PRA, et al. (2010). Uso do algoritmo de Gower na determinação da divergência genética entre acessos de tomateiro do grupo cereja. Acta Sci. 32: 423-431.   Roy JK, Lakshmikumaran MS, Balyan HS and Gupta PK (2004). AFLP-based genetic diversity and its comparison with diversity based on SSR, SAMPL, and phenotypic traits in bread wheat. Biochem. Genet. 42: 43-59. http://dx.doi.org/10.1023/B:BIGI.0000012143.48298.71 PMid:15068338   Saitou N and Nei M (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-425. PMid:3447015   SAS Institute Inc. (1992). Statistical Analysis System. Release 6.12. SAS, Cary.   Saxena S, Chandra R, Srivastava AP, Mishra M, et al. (2005). Analysis of genetic diversity among papaya cultivars using Single Primer Amplification Reaction (SPAR) methods. J. Hortic. Sci. Biotech. 80: 291-296.   Silva FF, Pereira MG, Campos WF and Damasceno Júnior PC (2007). DNA marker-assisted sex conversion in elite papaya genotype (Carica papaya L.). Crop Breed. Appl. Biotechnol. 7: 52-58.   Silva FF, Pereira MG, Ramos HCC, Damasceno Júnior PC, et al. (2008). Estimation of genetic parameters related to morphoagronomic and fruit quality traits of papaya. Crop Breed. Appl. Biotechnol. 8: 65-73.   Sokal RR and Rohlf FJ (1962). The comparison of dendrograms by objective methods. Taxon 11: 33-40. http://dx.doi.org/10.2307/1217208   Sudre CP, Goncalves LS, Rodrigues R, do Amaral Junior AT, et al. (2010). Genetic variability in domesticated Capsicum spp as assessed by morphological and agronomic data in mixed statistical analysis. Genet. Mol. Res. 9: 283-294. http://dx.doi.org/10.4238/vol9-1gmr698 PMid:20198584   Van Droogenbroeck B, Breyne P, Goetghebeur P, Romeijn-Peeters E, et al. (2002). AFLP analysis of genetic relationships among papaya and its wild relatives (Caricaceae) from Ecuador. Theor. Appl. Genet. 105: 289-297. http://dx.doi.org/10.1007/s00122-002-0983-4 PMid:12582531   Venkovsky R (1987). Herança Quantitativa. In: Melhoramento e Produção do Milho. (Paterniani E and Viegas GP, eds.). Fundação Cargill, Campinas, 135-214.   Vieira EA, Carvalho FIF, Bertan I, Kopp MM, et al. (2007). Association between genetic distances in wheat (Triticum aestivum L.) as estimated by AFLP and morphological markers. Genet. Mol. Biol. 30: 392-399. http://dx.doi.org/10.1590/S1415-47572007000300016   Vitória AP, Souza Filho GA, Bressan-Smith R, Pinto FO, et al. (2004). DNA fingerprint of Carica papaya L. genotypes by RAPD markers. J. New Seeds 6: 1-10. http://dx.doi.org/10.1300/J153v06n01_04   Williams JG, Kubelik AR, Livak KJ, Rafalski JA, et al. (1990). DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res. 18: 6531-6535. http://dx.doi.org/10.1093/nar/18.22.6531 PMid:1979162 PMCid:332606
2011
A. P. C. G. Berilli, Pereira, M. G., Gonçalves, L. S. A., da Cunha, K. S., Ramos, H. C. C., Filho, G. A. Souza, and Júnior, A. Tdo Amaral, Use of molecular markers in reciprocal recurrent selection of maize increases heterosis effects, vol. 10, pp. 2589-2596, 2011.
Agarwal M, Shrivastava N and Padh H (2008). Advances in molecular marker techniques and their applications in plant sciences. Plant Cell Rep. 27: 617-631. http://dx.doi.org/10.1007/s00299-008-0507-z PMid:18246355 Buckler ES, Gaut BS and McMullen MD (2006). Molecular and functional diversity of maize. Curr. Opin. Plant Biol. 9: 172-176. http://dx.doi.org/10.1016/j.pbi.2006.01.013 PMid:16459128 Collard BC and Mackill DJ (2008). Marker-assisted selection: an approach for precision plant breeding in the twenty-first century. Philos. Trans. R. Soc. Lond B Biol. Sci. 363: 557-572. http://dx.doi.org/10.1098/rstb.2007.2170 PMid:17715053    PMCid:2610170 Comstock RE and Robinson HF (1948). The components of genetic variance in populations of biparental progenies and their use in estimating the average degree of dominance. Biometrics 4: 254-266. http://dx.doi.org/10.2307/3001412 PMid:18108899 Cruz CD (2006). GENES Software: Version Windows: Computerapplication in Genetics and Statistics. Federal University of Viçosa, Viçosa. Daher RF, Pereira MG, Pereira AV and do Amaral Júnior AT (2002). Genetic divergence among Elephantgrass cultivars assessed by RAPD markers in composit samples. Sci. Agric. 59: 623-627. http://dx.doi.org/10.1590/S0103-90162002000400001 Doyle JJ and Doyle JL (1990). Isolation of plant DNA from fresh tissue. Focus 12: 13-15. Gabriel APC (2006). Seleção Recorrente Recíproca em Famílias de Irmãos Completos em Milho (Zea mays L.) Assistida por Marcadores Moleculares. Master’s thesis, UENF, Campos dos Goytacazes. Gabriel APC (2009). Seleção Recorrente Recíproca de Famílias de Irmãos Completos em Milho Comum (Zea mays L.) Monitorada por Marcadores Moleculares: Avanço de Gerações e Avaliação de Progresso Genético. Master’s thesis,UENF, Campos dos Goytacazes. Gonçalves LS, Rodrigues R, Amaral AT Jr, Karasawa M, et al. (2008). Comparison of multivariate statistical algorithms to cluster tomato heirloom accessions. Genet. Mol. Res. 7: 1289-1297. http://dx.doi.org/10.4238/vol7-4gmr526 PMid:19065764 Hallauer AR and Miranda Filho JB (1988). Quantitative in Maize Breeding. 2nd edn. Iowa State University Press, Ames. Leal AA, Mangolin CA, do Amaral ATJ, Goncalves LS, et al. (2010). Efficiency of RAPD versus SSR markers for determining genetic diversity among popcorn lines. Genet. Mol. Res. 9: 9-18. http://dx.doi.org/10.4238/vol9-1gmr692 PMid:20082266 Lima Neto FP and Souza Júnior CL (2009). Number of recombinations and genetic properties of a maize population undergoing recurrent selection. Sci. Agric. 66: 52-58. http://dx.doi.org/10.1590/S0103-90162009000100007 Mohammadi SA and Prasanna BM (2003). Analysis of genetic diversity in crop plants - salient statistical tools and considerations. Crop Sci. 43: 1235-1248. http://dx.doi.org/10.2135/cropsci2003.1235 Moose SP and Mumm RH (2008). Molecular plant breeding as the foundation for 21st century crop improvement. Plant Physiol. 147: 969-977. http://dx.doi.org/10.1104/pp.108.118232 PMid:18612074    PMCid:2442525 Pinto LR, Vieira MLC, Souza CL and Souza AP (2003a). Genetic-diversity assessed by microsatellites in tropical maize populations submitted to a high-intensity reciprocal recurrent selection. Euphytica 134: 277-286. http://dx.doi.org/10.1023/B:EUPH.0000004946.15260.4a Pinto LR, Vieira MLC, Souza CL and Souza AP (2003b). Reciprocal recurrent selection effects on the genetic structure of tropical maize populations assessed at microsatellite loci. Genet. Mol. Biol. 26: 355-364. http://dx.doi.org/10.1590/S1415-47572003000300022 Reif JC, Melchinger AE and Frisch M (2005). Genetical and mathematical properties of similarity and dissimilarity coefficients applied in plant breeding and seed bank management. Crop Sci. 45: 1-7. http://dx.doi.org/10.2135/cropsci2005.0001 Tardin FD, Pereira MG, Gabriel APC, do Amaral Júnior AT, et al. (2007). Selection index and molecular markers in reciprocal recurrent selection in maize. Crop Breed. Appl. Biotechnol. 7: 225-233. Williams JG, Kubelik AR, Livak KJ, Rafalski JA, et al. (1990). DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res. 18: 6531-6535. http://dx.doi.org/10.1093/nar/18.22.6531 PMid:1979162    PMCid:332606