Publications

Found 7 results
Filters: Author is S. Khan  [Clear All Filters]
2013
F. Al-Qurainy, Gaafar, A. - R. Z., Khan, S., Nadeem, M., Tarroum, M., Alaklabi, A., and Thomas, J., Antibacterial activity of leaf extract of Breonadia salicina (Rubiaceae), an endangered medicinal plant of Saudi Arabia, vol. 12, pp. 3212-3219, 2013.
F. Al-Qurainy, Khan, S., Nadeem, M., Tarroum, M., and Alaklabi, A., Assessment of phylogenetic relationship of rare plant species collected from Saudi Arabia using internal transcribed spacer sequences of nuclear ribosomal DNA, vol. 12, pp. 723-730, 2013.
Al-Farhan AH (2000). An Evaluation of the Current Status of the Flora of Saudi Arabia. Country Report Presented at the 2nd Arabian Plants Subject Group Meeting, May 2000. Abu Dhabi.   Al-Qurainy F, Khan S, Al-Hemaid FM, Ali MA, et al. (2011). Assessing Molecular Signature for Some Potential Date (Phoenix dactylifera L.) Cultivars from Saudi Arabia, Based on Chloroplast DNA Sequences rpoB and psbA-trnH. Int. J. Mol. Sci. 12: 6871-6880. http://dx.doi.org/10.3390/ijms12106871 PMid:22072924 PMCid:3211015   Alvarez I and Wendel JF (2003). Ribosomal ITS sequences and plant phylogenetic inference. Mol. Phylogenet. Evol. 29: 417-434. http://dx.doi.org/10.1016/S1055-7903(03)00208-2   Baldwin BG, Sanderson MJ, Porter JM, Wojciechowski MF, et al. (1995). The ITS region of nuclear ribosomal DNA: a valuable source of evidence on angiosperm phylogeny. Ann. Missouri Bot. Gard. 82: 247-277. http://dx.doi.org/10.2307/2399880   Chen S, Yao H, Han J, Liu C, et al. (2010). Validation of the ITS2 region as a novel DNA barcode for identifying medicinal plant species. PLoS One 5: e8613. http://dx.doi.org/10.1371/journal.pone.0008613 PMid:20062805 PMCid:2799520   Collenette S (1998). Checklist of Botanical Species in Saudi Arabia. Int. Asclepiad Soc., West Sussex.   Gitzendanner MA and Soltis PS (2000). Patterns of genetic variation in rare and widespread plant congeners. Am. J. Bot. 87: 783-792. http://dx.doi.org/10.2307/2656886 PMid:10860909   Harpke D, Meng S, Rutten T, Kerndorff H, et al. (2012). Phylogeny of Crocus (Iridaceae) based on one chloroplast and two nuclear loci: Ancient hybridization and chromosome number evolution. Mol. Phylogenet. Evol. [Ahead of Print]. PMid:23123733   Hillis DM and Dixon MT (1991). Ribosomal DNA: molecular evolution and phylogenetic inference. Q. Rev. Biol. 66: 411-453. http://dx.doi.org/10.1086/417338 PMid:1784710   Hussain S, Jamil M, Ullah F, Khan A, et al. (2010). Antimicrobial and antioxidant activities of the plant Heliotropium strigosum. Afr. J. Biotech. 9: 7738-7743.   Karron JD (1991). Pattern of Genetic Variation and Breeding Systems in Rare Plants. In: Genetics and Conservation of Rare Plants (Falk DA and Holsinger KE, eds.). Oxford University Press, New York, 87-98.   Khan S, Qureshi MI, Kamaluddin, Alam T, et al. (2007). Protocol for isolation of genomic DNA from dry and fresh roots of medicinal plants suitable for RAPD and restriction digestion. Afr. J. Biotechnol. 6: 175-178.   Khan S, Al-Qurainy F and Nadeem M (2012). Biotechnological approaches for conservation and improvement of rare and endangered plants of Saudi Arabia. Saudi J. Biol. Sci. 19: 1-11. http://dx.doi.org/10.1016/j.sjbs.2011.11.001   Kusumi J, Azuma H, Tzeng HY, Chou LS, et al. (2012). Phylogenetic analyses suggest a hybrid origin of the figs (Moraceae: Ficus) that are endemic to the Ogasawara (Bonin) Islands, Japan. Mol. Phylogenet. Evol. 63: 168-179. http://dx.doi.org/10.1016/j.ympev.2012.01.004 PMid:22281208   Lande R (1988). Genetics and demography in biological conservation. Science 241: 1455-1460. http://dx.doi.org/10.1126/science.3420403 PMid:3420403   Liu Z and Chen S (2010). ER regulates an evolutionarily conserved apoptosis pathway. Biochem. Biophys. Res. Commun. 400: 34-38. http://dx.doi.org/10.1016/j.bbrc.2010.07.132 PMid:20691160   Liu Z, Meng J and Sun X (2008). A novel feature-based method for whole genome phylogenetic analysis without alignment: application to HEV genotyping and subtyping. Biochem. Biophys. Res. Commun. 368: 223-230. http://dx.doi.org/10.1016/j.bbrc.2008.01.070 PMid:18230342   Liu Z, Zeng X, Yang D, Ren G, et al. (2012). Identification of medicinal vines by ITS2 using complementary discrimination methods. J. Ethnopharmacol. 141: 242-249. http://dx.doi.org/10.1016/j.jep.2012.01.057 PMid:22353709   Liu ZH and Sun X (2008). Coronavirus phylogeny based on base-base correlation. Int. J. Bioinform. Res. Appl. 4: 211-220. http://dx.doi.org/10.1504/IJBRA.2008.018347 PMid:18490264   Liu ZH, Jiao D and Sun X (2005). Classifying genomic sequences by sequence feature analysis. Genomics Proteomics Bioinformatics 3: 201-205. PMid:16689686   Mariita RM, Ogol CKPO, Oguge NO and Okemo PO (2011). Methanol extract of three medicinal plants from Samburu in Northern Kenya show significant antimycobacterial, antibacterial and antifungal properties. Res. J. Med. Plant. 5: 54-64. http://dx.doi.org/10.3923/rjmp.2011.54.64   Nasir YJ (1970). Flora of Pakistan. 25.   NCWCD (1998). Species Status and Conservation Strategy. B. Endangered, Vulnerable and Rare Plant Taxa in the Kingdom of Saudi Arabia. National Commission for Wildlife Conservation and Development, Riyadh.   Rautenberg A, Hathaway L, Oxelman B and Prentice HC (2010). Geographic and phylogenetic patterns in Silene section Melandrium (Caryophyllaceae) as inferred from chloroplast and nuclear DNA sequences. Mol. Phylogenet. Evol. 57: 978-991. http://dx.doi.org/10.1016/j.ympev.2010.08.003 PMid:20723610   Rieseberg LH and Soltis DE (1991). Phylogenetic consequences of cytoplasmic gene flow in plants. Evol. Trends Plants. 5: 65-84.   Schonewald-Cox CM, Chambers SM, MacBryde B and Thomas WL (1983). Genetics and Conservation: A Reference for Managing Wild Animals and Plant Populations. Benjamin/Cummings, Menlo Park.   Shneer VS (2009). DNA barcoding is a new approach in comparative genomics of plants. Genetika 45: 1436-1448. PMid:20058792   Su SL, Duan JA, Tang YP, Zhang X, et al. (2009). Isolation and biological activities of neomyrrhaol and other terpenes from the resin of Commiphora myrrha. Planta Med. 75: 351-355. http://dx.doi.org/10.1055/s-0028-1112214 PMid:19101885   Tamura K, Peterson D, Peterson N, Stecher G, et al. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28: 2731-2739. http://dx.doi.org/10.1093/molbev/msr121 PMid:21546353 PMCid:3203626   Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, et al. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25: 4876-4882. http://dx.doi.org/10.1093/nar/25.24.4876 PMid:9396791 PMCid:147148   Were O, Benn M and Munavu RM (1993). The pyrrolizidine alkaloids of Senecio syringifolius and S. hadiensis from Kenya. Phytochemistry 32: 1595-1602. http://dx.doi.org/10.1016/0031-9422(93)85187-V   Xu J, Guo Y, Zhao P, Guo P, et al. (2012). Four new sesquiterpenes from Commiphora myrrha and their neuroprotective effects. Fitoterapia 83: 801-805. http://dx.doi.org/10.1016/j.fitote.2012.03.016 PMid:22465505   Yuan Z, Chu G, Dan Y, Li J, et al. (2012). BRCA1: a new candidate gene for bovine mastitis and its association analysis between single nucleotide polymorphisms and milk somatic cell score. Mol. Biol. Rep. 39: 6625-6631. http://dx.doi.org/10.1007/s11033-012-1467-5 PMid:22327776   Zeng X, Yuan Z, Tong X, Li Q, et al. (2012). Phylogenetic study of Oryzoideae species and related taxa of the Poaceae based on atpB-rbcL and ndhF DNA sequences. Mol. Biol. Rep. 39: 5737-5744. http://dx.doi.org/10.1007/s11033-011-1383-0 PMid:22189545
2012
S. Khan, Al-Qurainy, F., Nadeem, M., and Tarroum, M., Development of genetic markers for Ochradenus arabicus (Resedaceae), an endemic medicinal plant of Saudi Arabia, vol. 11, pp. 1300-1308, 2012.
Al-Qurainy F, Khan S, Al-Hemaid FM, Ali MA, et al. (2011a). Assessing molecular signature for some potential date (Phoenix dactylifera L.) cultivars from Saudi Arabia, based on chloroplast DNA sequences rpoB and psbA-trnH. Int. J. Mol. Sci. 12: 6871-6880. http://dx.doi.org/10.3390/ijms12106871 PMid:22072924 PMCid:3211015   Al-Qurainy F, Khan S, Tarroum M, Al-Hemaid FM, et al. (2011b). Molecular authentication of the medicinal herb Ruta graveolens (Rutaceae) and an adulterant using nuclear and chloroplast DNA markers. Genet. Mol. Res. 10: 2806-2816. http://dx.doi.org/10.4238/2011.November.10.3 PMid:22095605   Barakat HH, el-Mousallamy AM, Souleman AM and Awadalla S (1991). Flavonoids of Ochradenus baccatus. Phytochemistry 30: 3777-3779. http://dx.doi.org/10.1016/0031-9422(91)80109-E   CBOL Plant Working Group (2009). A DNA barcode for land plants. Proc. Natl. Acad. Sci. U. S. A. 106: 12794-12797. http://dx.doi.org/10.1073/pnas.0905845106 PMid:19666622 PMCid:2722355   Chase MW, Salamin N, Wilkinson M, Dunwell JM, et al. (2005). Land plants and DNA barcodes: short-term and long-term goals. Philos. Trans. R Soc. Lond. B Biol. Sci. 360: 1889-1895. http://dx.doi.org/10.1098/rstb.2005.1720 PMid:16214746 PMCid:1609218   Chen S, Yao H, Han J, Liu C, et al. (2010). Validation of the ITS2 region as a novel DNA barcode for identifying medicinal plant species. PLoS One 5: e8613. http://dx.doi.org/10.1371/journal.pone.0008613 PMid:20062805 PMCid:2799520   Devey DS, Chase MW and Clarkson JJ (2009). A stuttering start to plant DNA barcoding: microsatellites present a previously overlooked problem in non-coding plastid regions. Taxon 58: 7-15.   Fazekas AJ, Kesanakurti PR, Burgess KS, Percy DM, et al. (2009). Are plant species inherently harder to discriminate than animal species using DNA barcoding markers? Mol. Ecol. Resour. 9: 130-139. http://dx.doi.org/10.1111/j.1755-0998.2009.02652.x   Hebert PDN, Cywinska A, Ball SL and deWaard JR (2003). Biological identifications through DNA barcodes. Proc. R. Soc. Lond. B Biol. Sci. 270: 313-321. http://dx.doi.org/10.1098/rspb.2002.2218 PMid:12614582 PMCid:1691236   Heinrich M (2008). Ethnopharmacy and natural product research - multidisciplinary opportunities for research in the metabolomic age. Phytochem. Lett. 1: 1-5. http://dx.doi.org/10.1016/j.phytol.2007.11.003   Khan S, Qureshi MI, Kamaluddin, Alam T, et al. (2007). Protocol for isolation of genomic DNA from dry and fresh roots of medicinal plants suitable for RAPD and restriction digestion. Afr. J. Biotech. 6: 175-178.   Khan S, Mirza KJ and Abdin MZ (2011). DNA fingerprinting for the authentication of Ruta graveolens. Afr. J. Biotech. 10: 8709-8715.   Khan S, Al-Qurainy F and Nadeem M (2012). Biotechnological approaches for conservation and improvement of rare and endangered plants of Saudi Arabia. Saudi J. Biol. Sci. 19: 1-11. http://dx.doi.org/10.1016/j.sjbs.2011.11.001   Li R and Dao Z (2011). Molecular authentication of the traditional Tibetan medicinal plant, Meconopsis impedita. Afr. J. Biotech. 10: 7493-7496.   Li Y, Ruan J, Chen S, Song J, et al. (2010). Authentication of Taxillus chinensis using DNA barcoding technique. J. Med. Plants Res. 4: 2706-2709.   Liu C, Gu Z, Yang W, Yang L, et al. (2011). Advances of biological taxonomy and species identification in medicinal plant species by DNA barcodes. J. Am. Sci. 7: 147-151.   Miller AG (1984). A revision of Ochradenus. Notes R. Bot. Gard. Edinb. 41: 491-594.   Müller Argoviensis J (1857). Monographie de la famille des Résédacées. Zürcher and Furrer, Zurich.   Müller Argoviensis J (1868). Resedaceae. In: Prodromus Systematis Naturalis Regni Vegetabilis (de Candolle AP, ed.). Vol. 16. Victor Masson, 548-589.   Newmaster SG, Fazekas AJ and Steeves RAD (2008). Testing candidate plant barcode regions in the Myristicaceae. Mol. Ecol. Resour. 8: 480-490. http://dx.doi.org/10.1111/j.1471-8286.2007.02002.x PMid:21585825   Shabana MM, Mirhom YW, Genenah AA, Aboutabl EA, et al. (1990). Study into wild Egyptian plants of potential medicinal activity. Ninth communication: hypoglycaemic activity of some selected plants in normal fasting and alloxanised rats. Arch. Exp. Veterinarmed. 44: 389-394. PMid:2241476   Wang L and He Z (2006). Chin. Wild Plant Resour. 25: 1-4.   Yao H, Song J, Liu C, Luo K, et al. (2010). Use of ITS2 region as the universal DNA barcode for plants and animals. PLoS One 5: e13102. http://dx.doi.org/10.1371/journal.pone.0013102 PMid:20957043 PMCid:2948509
2011
F. Al-Qurainy, Khan, S., Tarroum, M., Al-Hemaid, F. M., and Ali, M. A., Molecular authentication of the medicinal herb Ruta graveolens (Rutaceae) and an adulterant using nuclear and chloroplast DNA markers, vol. 10, pp. 2806-2816, 2011.
Al-Qurainy F, Khan S, Ali MA, Al-Hemaid FM, et al. (2011). Authentication of Ruta graveolens and its adulterant using internal transcribed spacer (ITS) sequences of nuclear ribosomal DNA. Pak. J. Bot. 43: 1613-1620. Alvarez I and Wendel JF (2003). Ribosomal ITS sequences and plant phylogenetic inference. Mol. Phylogenet. Evol. 29: 417-434. http://dx.doi.org/10.1016/S1055-7903(03)00208-2 Baldwin BG, Sanderson MJ, Porter JM, Wojciechowski MF, et al. (1995). The ITS region of nuclear ribosomal DNA: a valuable source of evidence on angiosperm phylogeny. Ann. Missouri Bot. Gard. 82: 247-277. http://dx.doi.org/10.2307/2399880 Choo BK, Moon BC, Yunui JI, Kim BB, et al. (2009). Development of SCAR markers for the discrimination of three species of medicinal plants, Angelica decursiva (Peucedanum decursivum) Peucedanum praeruptorum and Anthricus sylvestris, based on the internal transcribed spacer (ITS) sequence and random amplified polymorphic DNA (RAPD). Biol. Pharm. Bull. 32: 24-30. http://dx.doi.org/10.1248/bpb.32.24 Fugel R, Carle R and Schieber A (2005). Quality and authenticity control of fruit purées, fruit preparations and jams - a review. Trends Food Sci. Tech. 16: 433-441. http://dx.doi.org/10.1016/j.tifs.2005.07.001 PMid:21299575 Gulbitti-Onarici S, Sancak C, Sumer S and Ozcan S (2009). Phylogenetic relationships of some wild wheat species based on the internal transcribed spacer sequences of nrDNA. Curr. Sci. 96: 794-800. Jayasinghe R, Hai NL, Coram TE, Kong S, et al. (2009). Effectiveness of an innovative prototype subtracted diversity array (SDA) for fingerprinting plant species of medicinal importance. Planta Med. 75: 1180-1185. http://dx.doi.org/10.1055/s-0029-1185484 PMid:19296429 Kethidi DR, Roden DB, Ladd TR, Krell PJ, et al. (2003). Development of SCAR markers for the DNA-based detection of the Asian long-horned beetle Anoplophora glabripennis (Motschulsky). Arch. Insect Biochem. Physiol. 52: 193-194. http://dx.doi.org/10.1002/arch.10082 PMid:12655607 Khan S, Qureshi MI, Kamaluddin, Tanweer A, et al. (2007). Protocol for isolation of genomic DNA from dry and fresh roots of medicinal plants suitable for RAPD and restriction digestion. Afr. J. Biotech. 6: 175-178. Khan S, Mirza KJ, Tyagi MR and Abdin MZ (2011). Development of RAPD Markers for authentication of Ruta graveolens (L.) and its adulterant. MAPSB 5: 58-61. Kiran U, Khan S, Mirza KJ, Ram M, et al. (2010). SCAR markers: a potential tool for authentication of herbal drugs. Fitoterapia 81: 969-976.©FUNPEC-RP www.funpecrp.com.br Genetics and Molecular Research 10 (4): 2806-2816 (2011) Kurtz C, Leitenberger M, Carle R and Schieber A (2010). Evaluation of fruit authenticity and determination of the fruit content of fruit products using FTNIR spectroscopy of cell wall components. Food Chem. 119: 806-812. http://dx.doi.org/10.1016/j.foodchem.2009.07.028 Liu Z, Liu K, Chen L, Lei S, et al. (2006). Conservation ecology of endangered species Paphiopedilum armeniacum (Orchidaceae). Acta Ecol. Sin. 26: 2791-2800. http://dx.doi.org/10.1016/S1872-2032(06)60043-7 Nock CJ, Waters DL, Edwards MA, Bowen SG, et al. (2011). Chloroplast genome sequences from total DNA for plant identification. Plant Biotechnol. J. 9: 328-333. http://dx.doi.org/10.1111/j.1467-7652.2010.00558.x PMid:20796245 Rahman SZ, Latif A and Singhal KC (2003). A case report of ADR due to misidentification of an indigenous drug. Indian J. Pharmacol. 35: 128-136. Song J, Yao H, Li Y, Li X, et al. (2009). Authentication of the family polygonaceae in Chinese pharmacopoeia by DNA barcoding technique. J. Ethnopharmacol. 124: 434-439. http://dx.doi.org/10.1016/j.jep.2009.05.042 PMid:19505556 Sun YW, Yu JL, Hung YS, Changa JC, et al. (2011). Development of ITS sequence based SCAR markers for discrimination of Paphiopedilum armeniacum, Paphiopedilum micranthum, Paphiopedilum delenatii and their hybrids. Sci. Hortic. 127: 405-410. http://dx.doi.org/10.1016/j.scienta.2010.10.009 Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, et al. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25: 4876-4882. http://dx.doi.org/10.1093/nar/25.24.4876 PMid:9396791 PMCid:147148 White TJ, Bruns T, Lee S and Taylor J (1990). Amplification and Direct Sequencing of Fungal Ribosomal RNA Genes for Phylogenetics. In: PCR Protocols: A Guide to Methods and Applications (Innis M, Gelfand D, Sninsky J and White T, eds.). Academic Press, San Diego, 315-322. Zhang YB, Shaw PC, Sze CW, Wang ZT, et al. (2007). Molecular authentication of Chinese herbal materials. J. Food Drug Anal. 15: 1-9. Zuo Y, Chen Z, Kondo K, Funamoto T, et al. (2011). DNA barcoding of Panax species. Planta Med. 77: 182-187. http://dx.doi.org/10.1055/s-0030-1250166 PMid:20803416