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2011
R. K. Wang, Lu, J. J., Xing, G. N., Gai, J. Y., and Zhao, T. J., Molecular evolution of two consecutive carotenoid cleavage dioxygenase genes in strigolactone biosynthesis in plants, vol. 10, pp. 3664-3673, 2011.
Auldridge ME, McCarty DR and Klee HJ (2006). Plant carotenoid cleavage oxygenases and their apocarotenoid products. Curr. Opin. Plant Biol. 9: 315-321. http://dx.doi.org/10.1016/j.pbi.2006.03.005 PMid:16616608   Ayala FJ (1977). Nothing in biology makes sense except in the light of evolution. J. Hered. 68: 3-10. PMid:325064   Besserer A, Puech-Pages V, Kiefer P, Gomez-Roldan V, et al. (2006). Strigolactones stimulate arbuscular mycorrhizal fungi by activating mitochondria. PLoS Biol. 4: e226. http://dx.doi.org/10.1371/journal.pbio.0040226 PMid:16787107 PMCid:1481526   Chaw SM, Chang CC, Chen HL and Li WH (2004). Dating the monocot-dicot divergence and the origin of core eudicots using whole chloroplast genomes. J. Mol. Evol. 58: 424-441. http://dx.doi.org/10.1007/s00239-003-2564-9 PMid:15114421   Drummond RS, Martinez-Sanchez NM, Janssen BJ, Templeton KR, et al. (2009). Petunia hybrida CAROTENOID CLEAVAGE DIOXYGENASE7 is involved in the production of negative and positive branching signals in petunia. Plant Physiol. 151: 1867-1877. http://dx.doi.org/10.1104/pp.109.146720 PMid:19846541 PMCid:2785980   Foo E, Morris SE, Parmenter K, Young N, et al. (2007). Feedback regulation of xylem cytokinin content is conserved in pea and Arabidopsis. Plant Physiol. 143: 1418-1428. http://dx.doi.org/10.1104/pp.106.093708 PMid:17277096 PMCid:1820905   Heckman DS, Geiser DM, Eidell BR, Stauffer RL, et al. (2001). Molecular evidence for the early colonization of land by fungi and plants. Science 293: 1129-1133. http://dx.doi.org/10.1126/science.1061457 PMid:11498589   Keeling CI, Dullat HK, Yuen M, Ralph SG, et al. (2010). Identification and functional characterization of monofunctional ent-copalyl diphosphate and ent-kaurene synthases in white spruce reveal different patterns for diterpene synthase evolution for primary and secondary metabolism in gymnosperms. Plant Physiol. 152: 1197-1208. http://dx.doi.org/10.1104/pp.109.151456 PMid:20044448 PMCid:2832265   Matusova R, Rani K, Verstappen FWA, Franssen MCR, et al. (2005). The strigolactone germination stimulants of the plant-parasitic Striga and Orobanche spp. are derived from the carotenoid pathway. Plant Physiol. 139: 920-934. http://dx.doi.org/10.1104/pp.105.061382 PMid:16183851 PMCid:1256006   Morrison DA (2007). Increasing the efficiency of searches for the maximum likelihood tree in a phylogenetic analysis of up to 150 nucleotide sequences. Syst. Biol. 56: 988-1010. http://dx.doi.org/10.1080/10635150701779808 PMid:18066931   Proust H, Hoffmann B, Xie X, Yoneyama K, et al. (2011). Strigolactones regulate protonema branching and act as a quorum sensing-like signal in the moss Physcomitrella patens. Development 138: 1531-1539. http://dx.doi.org/10.1242/dev.058495 PMid:21367820   Redecker D, Kodner R and Graham LE (2000). Glomalean fungi from the Ordovician. Science 289: 1920-1921. http://dx.doi.org/10.1126/science.289.5486.1920 PMid:10988069   Rensing SA, Ick J, Fawcett JA, Lang D, et al. (2007). An ancient genome duplication contributed to the abundance of metabolic genes in the moss Physcomitrella patens. BMC Evol. Biol. 7: 130. http://dx.doi.org/10.1186/1471-2148-7-130 PMid:17683536 PMCid:1952061   Sanderson MJ and Doyle JA (2001). Sources of error and confidence intervals in estimating the age of angiosperms from rbcL and 18S rDNA data. Am. J. Bot. 88: 1499-1516. http://dx.doi.org/10.2307/3558458 PMid:21669683   Tamura K, Dudley J, Nei M and Kumar S (2007). MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24: 1596-1599. http://dx.doi.org/10.1093/molbev/msm092 PMid:17488738   Umehara M, Hanada A, Yoshida S, Akiyama K, et al. (2008). Inhibition of shoot branching by new terpenoid plant hormones. Nature 455: 195-200. http://dx.doi.org/10.1038/nature07272 PMid:18690207   Vogel JT, Walter MH, Giavalisco P, Lytovchenko A, et al. (2010). SlCCD7 controls strigolactone biosynthesis, shoot branching and mycorrhiza-induced apocarotenoid formation in tomato. Plant J. 61: 300-311. http://dx.doi.org/10.1111/j.1365-313X.2009.04056.x PMid:19845881   Wolfe KH, Gouy M, Yang YW, Sharp PM, et al. (1989a). Date of the monocot-dicot divergence estimated from chloroplast DNA sequence data. Proc. Natl. Acad. Sci. U. S. A. 86: 6201-6205. http://dx.doi.org/10.1073/pnas.86.16.6201 PMid:2762323 PMCid:297805   Wolfe KH, Sharp PM and Li WH (1989b). Rates of synonymous substitution in plant nuclear genes. J. Mol. Evol. 29: 208-211. http://dx.doi.org/10.1007/BF02100204   Yang Z (1998). Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution. Mol. Biol. Evol. 15: 568-573. http://dx.doi.org/10.1093/oxfordjournals.molbev.a025957 PMid:9580986   Yang Z (2007). PAML 4: phylogenetic analysis by maximum likelihood. Mol. Biol. Evol. 24: 1586-1591. http://dx.doi.org/10.1093/molbev/msm088 PMid:17483113   Yang Z and Nielsen R (2002). Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages. Mol. Biol. Evol. 19: 908-917. http://dx.doi.org/10.1093/oxfordjournals.molbev.a004148 PMid:12032247   Yokota T, Sakaic H, Okunod K, Yoneyamad K, et al. (1998). Alectrol and orobanchol, germination stimulants for Orobanche minor, from its host red clover. Phytochemistry 49: 1967-1973. http://dx.doi.org/10.1016/S0031-9422(98)00419-1   Zhang J, Nielsen R and Yang Z (2005). Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level. Mol. Biol. Evol. 22: 2472-2479. http://dx.doi.org/10.1093/molbev/msi237 PMid:16107592