Publications
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“E6 and E7 gene sequences of human papillomavirus type 13 isolated from a young native girl from the Brazilian Amazon”, Genetics and Molecular Research, vol. 19, no. 1, 2020.
, “Method for obtaining high-resolution proteomic analysis from pericarps of guarana”, vol. 13, pp. 8014-8024, 2014.
, “Electrophoresis and spectrometric analyses of adaptation-related proteins in thermally stressed Chromobacterium violaceum”, vol. 12, pp. 5057-5071, 2013.
, “Comparison of bacterial communities in the Solimões and Negro River tributaries of the Amazon River based on small subunit rRNA gene sequences”, vol. 10, pp. 3783-3793, 2011.
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Borneman J and Triplett EW (1997). Molecular microbial diversity in soils from eastern Amazonia: evidence for unusual microorganisms and microbial population shifts associated with deforestation. Appl. Environ. Microbiol. 63: 2647- 2653.
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Brinkmeyer R, Knittel K, Jurgens J, Weyland H, et al. (2003). Diversity and structure of bacterial communities in Arctic versus Antarctic pack ice. Appl. Environ. Microbiol. 69: 6610-6619.
http://dx.doi.org/10.1128/AEM.69.11.6610-6619.2003
PMid:14602620 PMCid:262250
Casamayor EO, Pedros-Alio C, Muyzer G and Amann R (2002). Microheterogeneity in 16S ribosomal DNA-defined bacterial populations from a stratified planktonic environment is related to temporal changes and to ecological adaptations. Appl. Environ. Microbiol. 68: 1706-1714.
http://dx.doi.org/10.1128/AEM.68.4.1706-1714.2002
PMid:11916688 PMCid:123866
Chao A, Chazdon RL, Colwell RK and Shen T-J (2005). A new statistical approach for assessing similarity of species composition with incidence and abundance data. Ecol. Lett. 8: 148-159.
http://dx.doi.org/10.1111/j.1461-0248.2004.00707.x
Crump BC, Armbrust EV and Baross JA (1999). Phylogenetic analysis of particle-attached and free-living bacterial communities in the Columbia river, its estuary, and the adjacent coastal ocean. Appl. Environ. Microbiol. 65: 3192- 3204.
PMid:10388721 PMCid:91474
Crump BC, Kling GW, Bahr M and Hobbie JE (2003). Bacterioplankton community shifts in an arctic lake correlate with seasonal changes in organic matter source. Appl. Environ. Microbiol. 69: 2253-2268.
http://dx.doi.org/10.1128/AEM.69.4.2253-2268.2003
PMid:12676708 PMCid:154827
Eiler A and Bertilsson S (2004). Composition of freshwater bacterial communities associated with cyanobacterial blooms in four Swedish lakes. Environ. Microbiol. 6: 1228-1243.
http://dx.doi.org/10.1111/j.1462-2920.2004.00657.x
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Ewing B and Green P (1998). Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res. 8: 186-194.
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Felsenstein J (2007). PHYLIP - Phylogeny Inference Package. Version 3.67. Department of Genetics, University of Washington, Seattle.
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http://dx.doi.org/10.1073/pnas.0507535103
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Freese HM, Karsten U and Schumann R (2006). Bacterial abundance, activity, and viability in the eutrophic River Warnow, northeast Germany. Microb. Ecol. 51: 117-127.
http://dx.doi.org/10.1007/s00248-005-0091-5
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http://dx.doi.org/10.1016/j.copbio.2006.05.006
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Hahn MW, Pockl M and Wu QL (2005). Low intraspecific diversity in a Polynucleobacter subcluster population numerically dominating bacterioplankton of a freshwater pond. Appl. Environ. Microbiol. 71: 4539-4547.
http://dx.doi.org/10.1128/AEM.71.8.4539-4547.2005
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Hugenholtz P, Goebel BM and Pace NR (1998). Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity. J. Bacteriol. 180: 4765-4774.
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http://dx.doi.org/10.1111/j.1574-6941.2006.00131.x
PMid:16907758
Lima-Bittencourt CI, Astolfi-Filho S, Chartone-Souza E, Santos FR, et al. (2007). Analysis of Chromobacterium sp. natural isolates from different Brazilian ecosystems. BMC Microbiol. 7: 58.
http://dx.doi.org/10.1186/1471-2180-7-58
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Pearce DA, van der Gast CJ, Woodward K and Newsham KK (2005). Significant changes in the bacterioplankton community structure of a maritime Antarctic freshwater lake following nutrient enrichment. Microbiology 151: 3237-3248.
http://dx.doi.org/10.1099/mic.0.27258-0
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http://dx.doi.org/10.1128/AEM.71.3.1501-1506.2005
PMid:15746353 PMCid:1065144
Simmon KE, Croft AC and Petti CA (2006). Application of SmartGene IDNS software to partial 16S rRNA gene sequences for a diverse group of bacteria in a clinical laboratory. J. Clin. Microbiol. 44: 4400-4406.
http://dx.doi.org/10.1128/JCM.01364-06
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Smith VH (2007). Microbial diversity-productivity relationships in aquatic ecosystems. FEMS Microbiol. Ecol. 62: 181- 186.
http://dx.doi.org/10.1111/j.1574-6941.2007.00381.x
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PMid:7984417 PMCid:308517
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http://dx.doi.org/10.1126/science.1093857
PMid:15001713
Wang Q, Garrity GM, Tiedje JM and Cole JR (2007). Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl. Environ. Microbiol. 73: 5261-5267.
http://dx.doi.org/10.1128/AEM.00062-07
PMid:17586664 PMCid:1950982
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Warnecke F, Amann R and Pernthaler J (2004). Actinobacterial 16S rRNA genes from freshwater habitats cluster in four distinct lineages. Environ. Microbiol. 6: 242-253.
http://dx.doi.org/10.1111/j.1462-2920.2004.00561.x
PMid:14871208
Zwart G, Crump BC, Agterveld MPK, Hagen F, et al. (2002). Typical freshwater bacteria: an analysis of available 16s rRNA gene sequences from plankton of lakes and rivers. Aquat. Microb. Ecol. 28: 141-155.
http://dx.doi.org/10.3354/ame028141
“Identification and isolation of full-length cDNA sequences by sequencing and analysis of expressed sequence tags from guarana (Paullinia cupana)”, vol. 10, pp. 1188-1199, 2011.
, Ângelo PCS, Nunes-Silva CG, Brígido MM, Azevedo JSN, et al. (2008). Guarana (Paullinia cupana var. sorbilis), an anciently consumed stimulant from the Amazon rain forest: the seeded-fruit transcriptome. Plant Cell Rep. 27: 117- 124.
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DeMarco R and Verjovski-Almeida S (2008). Expressed Sequence Tags (ESTs) and Gene Discovery: Schistosoma mansoni. In: Bioinformatics in Tropical Disease Research. Available at [http://ncbi.nlm.nih.gov/bookshelf/ br.fugi?book=bioinfo]. Accessed May 20, 2010.
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Felsenstein J (2008). Phylip (Phylogeny Inference Package) Version 3.68. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle. Available at [http://evolution.genetics.washington.edu/phylip.html]. Accessed December 18, 2009.
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Guindon S and Gascuel O (2003). A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52: 696-704.
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Ishida M, Kitao N, Mizuno K, Tanikawa N, et al. (2009). Occurrence of theobromine synthase genes in purine alkaloid-free species of Camellia plants. Planta 229: 559-568.
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Lu G, Zhang S and Fang X (2008). An improved string composition method for sequence comparison BMC Bioinformatics 9 (Suppl 6): S15.
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McCarthy AA and McCarthy JG (2007). The structure of two N-methyltransferases from the caffeine biosynthetic pathway. Plant Physiol. 144: 879-889.
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Nanjo T, Sakurai T, Totoki Y, Toyoda A, et al. (2007). Functional annotation of 19,841 Populus nigra full-length enriched cDNA clones. BMC Genomics 8: 448.
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Uefuji H, Ogita S, Yamaguchi Y, Koizumi N, et al. (2003). Molecular cloning and functional characterization of three distinct N-methyltransferases involved in the caffeine biosynthetic pathway in coffee plants. Plant Physiol. 132: 372-380.
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“Prevalence of human papillomavirus (HPV) type 16 variants and rare HPV types in the central Amazon region”, vol. 10, pp. 186-196, 2011.
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Cerqueira DM, Raiol T, Veras NM, von Gal MN, et al. (2008). New variants of human papillomavirus type 18 identified in central Brazil. Virus Genes 37: 282-287.
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Chaturvedi AK, Brinkman JA, Gaffga AM, Dumestre J, et al. (2004). Distribution of human papillomavirus type 16 variants in human immunodeficiency virus type 1-positive and -negative women. J. Gen. Virol. 85: 1237-1241.
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