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J. C. C. Peixoto, Leomil, L., Souza, J. V., Peixoto, F. B. S., and Astolfi-Filho, S., Comparison of bacterial communities in the Solimões and Negro River tributaries of the Amazon River based on small subunit rRNA gene sequences, vol. 10, pp. 3783-3793, 2011.
Borneman J and Triplett EW (1997). Molecular microbial diversity in soils from eastern Amazonia: evidence for unusual microorganisms and microbial population shifts associated with deforestation. Appl. Environ. Microbiol. 63: 2647- 2653. PMid:9212415 PMCid:168563   Brinkmeyer R, Knittel K, Jurgens J, Weyland H, et al. (2003). Diversity and structure of bacterial communities in Arctic versus Antarctic pack ice. Appl. Environ. Microbiol. 69: 6610-6619. PMid:14602620 PMCid:262250   Casamayor EO, Pedros-Alio C, Muyzer G and Amann R (2002). Microheterogeneity in 16S ribosomal DNA-defined bacterial populations from a stratified planktonic environment is related to temporal changes and to ecological adaptations. Appl. Environ. Microbiol. 68: 1706-1714. PMid:11916688 PMCid:123866   Chao A, Chazdon RL, Colwell RK and Shen T-J (2005). A new statistical approach for assessing similarity of species composition with incidence and abundance data. Ecol. Lett. 8: 148-159.   Crump BC, Armbrust EV and Baross JA (1999). Phylogenetic analysis of particle-attached and free-living bacterial communities in the Columbia river, its estuary, and the adjacent coastal ocean. Appl. Environ. Microbiol. 65: 3192- 3204. PMid:10388721 PMCid:91474   Crump BC, Kling GW, Bahr M and Hobbie JE (2003). Bacterioplankton community shifts in an arctic lake correlate with seasonal changes in organic matter source. Appl. Environ. Microbiol. 69: 2253-2268. PMid:12676708 PMCid:154827   Eiler A and Bertilsson S (2004). Composition of freshwater bacterial communities associated with cyanobacterial blooms in four Swedish lakes. Environ. Microbiol. 6: 1228-1243. PMid:15560821   Ewing B and Green P (1998). Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res. 8: 186-194. PMid:9521922   Felsenstein J (2007). PHYLIP - Phylogeny Inference Package. Version 3.67. Department of Genetics, University of Washington, Seattle.   Fierer N and Jackson RB (2006). The diversity and biogeography of soil bacterial communities. PNAS 103: 626-631. PMid:16407148 PMCid:1334650   Freese HM, Karsten U and Schumann R (2006). Bacterial abundance, activity, and viability in the eutrophic River Warnow, northeast Germany. Microb. Ecol. 51: 117-127. PMid:16395540   Fuhrman JA, McCallum K and Davis AA (1993). Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific Oceans. Appl. Environ. Microbiol. 59: 1294-1302. PMid:7685997 PMCid:182080   Hahn MW (2006). The microbial diversity of inland waters. Curr. Opin. Biotechnol. 17: 256-261. PMid:16704930   Hahn MW, Pockl M and Wu QL (2005). Low intraspecific diversity in a Polynucleobacter subcluster population numerically dominating bacterioplankton of a freshwater pond. Appl. Environ. Microbiol. 71: 4539-4547. PMid:16085847 PMCid:1183363   Hugenholtz P, Goebel BM and Pace NR (1998). Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity. J. Bacteriol. 180: 4765-4774. PMid:9733676 PMCid:107498   Lemarchand C, Jardillier L, Carrias JF, Richardot M, et al. (2006). Community composition and activity of prokaryotes associated to detrital particles in two contrasting lake ecosystems. FEMS Microbiol. Ecol. 57: 442-451. PMid:16907758   Lima-Bittencourt CI, Astolfi-Filho S, Chartone-Souza E, Santos FR, et al. (2007). Analysis of Chromobacterium sp. natural isolates from different Brazilian ecosystems. BMC Microbiol. 7: 58. PMid:17584942 PMCid:1913517   Mullins TD, Britschgi TB, Krest RL and Giovannoni SJ (1995). Genetic comparisons reveal the same unknown bacterial lineages in Atlantic and Pacific bacterioplankton communities. Limnol. Oceanogr. 40: 148-158.   Pearce DA, van der Gast CJ, Woodward K and Newsham KK (2005). Significant changes in the bacterioplankton community structure of a maritime Antarctic freshwater lake following nutrient enrichment. Microbiology 151: 3237-3248. PMid:16207907   Rai H and Hill G (1978). Bacteriological studies on Amazonas, Mississippi and Nile waters. Arch. Hydrobiol. 81: 445-461.   Schloss PD and Handelsman J (2005). Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl. Environ. Microbiol. 71: 1501-1506. PMid:15746353 PMCid:1065144   Simmon KE, Croft AC and Petti CA (2006). Application of SmartGene IDNS software to partial 16S rRNA gene sequences for a diverse group of bacteria in a clinical laboratory. J. Clin. Microbiol. 44: 4400-4406. PMid:17050811 PMCid:1698390   Sioli H (1976). A Limnologia na Região Amazônica Brasileira. In: Anais do I Encontro Nacional de Limnologia e Pesca Continental, Belo Horizonte, 153-169.   Sioli H (1984). The Amazon and its Main Affluents: Hydrography, Morphology of the River Courses, and River Types. In: The Amazon. Limnology and Landscape Ecology of a Mighty Tropical River and its Basin Dr. W. Junk Publishers, Lancaster, Printed in the Netherlands, Boston, 129-163.   Smith VH (2007). Microbial diversity-productivity relationships in aquatic ecosystems. FEMS Microbiol. Ecol. 62: 181- 186. PMid:17868363   Thompson JD, Higgins DG and Gibson TJ (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22: 4673-4680. PMid:7984417 PMCid:308517   Tyson GW, Chapman J, Hugenholtz P, Allen EE, et al. (2004). Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature 428: 37-43. PMid:14961025   Venter JC, Remington K, Heidelberg JF, Halpern AL, et al. (2004). Environmental genome shotgun sequencing of the Sargasso Sea. Science 304: 66-74. PMid:15001713   Wang Q, Garrity GM, Tiedje JM and Cole JR (2007). Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl. Environ. Microbiol. 73: 5261-5267. PMid:17586664 PMCid:1950982   Ward DM, Ferris MJ, Nold SC and Bateson MM (1998). A natural view of microbial biodiversity within hot spring cyanobacterial mat communities. Microbiol. Mol. Biol. Rev. 62: 1353-1370. PMid:9841675 PMCid:98949   Warnecke F, Amann R and Pernthaler J (2004). Actinobacterial 16S rRNA genes from freshwater habitats cluster in four distinct lineages. Environ. Microbiol. 6: 242-253. PMid:14871208   Zwart G, Crump BC, Agterveld MPK, Hagen F, et al. (2002). Typical freshwater bacteria: an analysis of available 16s rRNA gene sequences from plankton of lakes and rivers. Aquat. Microb. Ecol. 28: 141-155.