Publications

Found 17 results
Filters: Author is M.G. Pereira  [Clear All Filters]
2012
K. S. da Cunha, Pereira, M. G., Gonçalves, L. S. A., Berilli, A. P. C. G., de Oliveira, E. C., Ramos, H. C. C., and Júnior, A. Tdo Amaral, Full-sib reciprocal recurrent selection in the maize populations Cimmyt and Piranão, vol. 11, pp. 3398-3408, 2012.
Berilli AP, Pereira MG, Goncalves LS, da Cunha KS, et al. (2011). Use of molecular markers in reciprocal recurrent selection of maize increases heterosis effects. Genet. Mol. Res. 10: 2589-2596. http://dx.doi.org/10.4238/2011.October.25.6 PMid:22057955   Bernardo R (2008). Molecular markers and selection for complex traits in plants: learning from the last 20 years. Crop Sci. 48: 1649-1664. http://dx.doi.org/10.2135/cropsci2008.03.0131   Comstock RE, Robinson HF and Harvey PH (1949). A breeding procedure designed to make maximum use of both general and specific combining ability. Agron. J. 41: 360-367. http://dx.doi.org/10.2134/agronj1949.00021962004100080006x   Daher RF, Pereira MG, Pereira AV and Amaral Júnior AT (2002). Genetic divergence among Elephantgrass cultivars accessed by RAPD markers in composite samples. Sci. Agric. 59: 623-627. http://dx.doi.org/10.1590/S0103-90162002000400001   Doyle JJ and Doyle JL (1990). Isolation of plant DNA from fresh tissue. Focus 12: 13-15.   Fan XM, Zhang YD, Liu L, Chen HM, et al. (2010). Screening tropical germplasm by temperate inbred testers. Maydica 55: 55-63.   FAO (Food and Agriculture Organization of the United Nations) (2011). The agricultural production. Available at [http://www.faostat.fao.org]. Accessed April 22, 2011.   Gabriel APC (2006). Seleção Recorrente Recíproca em Famílias de Irmãos Completos em Milho (Zea mays L.) Assistida por Marcadores Moleculares. Master's thesis, Universidade Estadual do Norte Fluminense Darcy Ribeiro, Campos dos Goytacazes.   Gabriel APC (2009). Seleção Recorrente Recíproca de Famílias de Irmãos Completos em Milho Comum (Zea mays L.) Monitorada por Marcadores Moleculares: Avanço de Gerações e Avaliação de Progresso Genético. Master's thesis, Universidade Estadual do Norte Fluminense Darcy Ribeiro, Campos dos Goytacazes.   Goodman MM (2005). Broadening the U.S. maize germplasm base. Maydica 50: 203-214.   Hallauer AR and Miranda Filho JB (1988). Quantitative Genetics in Maize Breeding. 2nd edn. Iowa State University Press, Ames. PMid:3244349 PMCid:365608   Hallauer AR, Carena MJ and Miranda Filho JB (2009). Quantitative Genetics in Maize Breeding. Springer, New York.   Hartings H, Berardo N, Mazzinelli GF, Valoti P, et al. (2008). Assessment of genetic diversity and relationships among maize (Zea mays L.) Italian landraces by morphological traits and AFLP profiling. Theor. Appl. Genet. 117: 831-842. http://dx.doi.org/10.1007/s00122-008-0823-2 PMid:18584146   Lynch M and Walsh B (1998). Genetics and Analysis of Quantitative Traits. Sinauer Associates, Sunderland.   Mikel MA and Dudley JW (2006). Evolution of North American dent corn from public to proprietary germplasm. Crop Sci. 46: 1193-1205. http://dx.doi.org/10.2135/cropsci2005.10-0371   Reif JC, Fischer S, Schrag TA, Lamkey KR, et al. (2010). Broadening the genetic base of European maize heterotic pools with US Cornbelt germplasm using field and molecular marker data. Theor. Appl. Genet. 120: 301-310. http://dx.doi.org/10.1007/s00122-009-1055-9 PMid:19436986   Romay MC, Ordás B, Revilla P and Ordás A (2011). Three cycles of full-sib reciprocal recurrent selection in two Spanish maize populations. Crop Sci. 51: 1016-1022. http://dx.doi.org/10.2135/cropsci2010.06.0365   Santos FS (2005). Seleção Recorrente entre Famílias de Meios-Irmãos da População UNB-2U de Milho Pipoca (Zea mays L.). Doctoral thesis, Universidade Estadual do Norte Fluminense Darcy Ribeiro, Campos dos Goytacazes.   Smith JSC, Duvick DN, Smith OS, Cooper M, et al. (2004). Changer in pedigree backgrounds of Pioneer brand maize hybrids widely grown from 1930 to 1999. Crop Sci. 44: 1935-1946. http://dx.doi.org/10.2135/cropsci2004.1935   Souza CL Jr, Barrios SCL and Moro GV (2010). Performance of maize single-crosses developed from populations improved by a modified reciprocal recurrent selection. Sci. Agric. 67: 198-205. http://dx.doi.org/10.1590/S0103-90162010000200011   Springer NM and Stupar RM (2007). Allelic variation and heterosis in maize: how do two halves make more than a whole? Genome Res. 17: 264-275. http://dx.doi.org/10.1101/gr.5347007 PMid:17255553   Tardin FD, Pereira MG, Gabriel APC, Amaral Júnior AT, et al. (2007). Selection index and molecular markers in reciprocal recurrent selection in maize. Crop Breed. Appl. Biotechnol. 7: 225-233.   Williams JG, Kubelik AR, Livak KJ, Rafalski JA, et al. (1990). DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res. 18: 6531-6535. http://dx.doi.org/10.1093/nar/18.22.6531 PMid:1979162 PMCid:332606
H. C. C. Ramos, Pereira, M. G., Gonçalves, L. S. A., Berilli, A. P. C. G., Pinto, F. O., and Ribeiro, E. H., Multivariate analysis to determine the genetic distance among backcross papaya (Carica papaya) progenies, vol. 11, pp. 1280-1295, 2012.
Bertan I, Carvalho FIF, Oliveira AC, Benin G, et al. (2009). Morphological, pedigree, and molecular distances and their association with hybrid wheat performance. Pesq. Agropec. Bras. 44: 155-163. http://dx.doi.org/10.1590/S0100-204X2009000200007   Crossa J and Franco J (2004). Statistical methods for classifying genotypes. Euphytica 137: 19-37. http://dx.doi.org/10.1023/B:EUPH.0000040500.86428.e8   Cruz CD (2008). Programa GENES: Diversidade Genética. Universidade Federal de Viçosa, Viçosa.   Daher RF, Pereira MG, Tupinambá EA, Amaral Júnior AT, et al. (2002). Assessment of coconut tree genetic divergence by compound sample RAPD marker analysis. Crop Breed. Appl. Biotechnol. 3: 431-438.   Doyle JJ and Doyle JL (1990). Isolation of plant DNA from fresh tissue. Focus 12: 13-15.   Eustice M, Yu Q, Lai CW, Hou S, et al. (2008). Development and application of microsatellite markers for genomic analysis of papaya. Tree Genet. Genomes 4: 333-341. http://dx.doi.org/10.1007/s11295-007-0112-2   Fonseca RM, Lopes R, Barros WS, Lopes MTG, et al. (2008). Morphologic Characterization and genetic diversity of Capsicum chinense Jacq. accessions along the upper Rio Negro - Amazonas. Crop Breed. Appl. Biotechnol. 8: 187-194.   Franco F, Crossa J, Ribaut JM, Betran J, et al. (2001). A method for combining molecular markers and phenotypic attributes for classifying plant genotypes. Theor. Appl. Genet. 103: 944-952. http://dx.doi.org/10.1007/s001220100641   Gonçalves LS, Rodrigues R, Amaral AT Jr, Karasawa M, et al. (2008). Comparison of multivariate statistical algorithms to cluster tomato heirloom accessions. Genet. Mol. Res. 7: 1289-1297. http://dx.doi.org/10.4238/vol7-4gmr526 PMid:19065764   Gower JC (1971). A General coefficient of similarity and some of its properties. Biometrics 27: 857-871. http://dx.doi.org/10.2307/2528823   Jobin-Decor MP, Graham GC, Henr RJ and Drew RA (1997). RAPD and isozyme analysis of genetic relationships between Carica papaya and wild relatives. Genet. Resour. Crop Evol. 44: 471-477. http://dx.doi.org/10.1023/A:1008644901727   Kim MS, Moore PH, Zee F, Fitch MM, et al. (2002). Genetic diversity of Carica papaya as revealed by AFLP markers. Genome 45: 503-512. http://dx.doi.org/10.1139/g02-012 PMid:12033619   Kumar S, Nei M, Dudley J and Tamura K (2009). MEGA: A biologist-centric software for evolutionary analysis of DNA and protein sequences. Brief. Bioinform. 9: 299-306. http://dx.doi.org/10.1093/bib/bbn017 PMid:18417537 PMCid:2562624   Kyndt T, Romeijn-Peeters E, Van Droogenbroeck B, Romero-Motochi JP, et al. (2005). Species relationships in the genus Vasconcellea (Caricaceae) based on molecular and morphological evidence. Am. J. Bot. 92: 1033-1044. http://dx.doi.org/10.3732/ajb.92.6.1033 PMid:21652488   Lefebvre V, Goffinet B, Chauvet JC, Caromel B, et al. (2001). Evaluation of genetic distances between pepper inbred lines for cultivar protection purposes: comparison of AFLP, RAPD and phenotypic data. Theor. Appl. Genet. 103: 741-750. http://dx.doi.org/10.1007/s001220051705   Mantel N (1967). The detection of disease clustering and a generalized regression approach. Cancer Res. 27: 209-220. PMid:6018555   Marić S, Bolarić S, Martinčić J, Pejić I, et al. (2004). Genetic diversity of hexaploid wheat cultivars estimated by RAPD markers, morphological traits and coefficients of parentage. Plant Breed. 123: 366-369. http://dx.doi.org/10.1111/j.1439-0523.2004.00956.x   Mattos LA, Amorim EP, Amorim VBO, Cohen KO, et al. (2010). Agronomical and molecular characterization of banana germoplasm. Pesq. Agropec. Bras. 45: 146-154. http://dx.doi.org/10.1590/S0100-204X2010000200005   Ming R, Yu Q and Moore PH (2007). Sex determination in papaya. Semin. Cell Dev. Biol. 18: 401-408. http://dx.doi.org/10.1016/j.semcdb.2006.11.013 PMid:17353137   Mohammadi SA and Prasanna BM (2003). Analysis of genetic diversity in crop plants - Salient statistical tools and considerations. Crop Sci. 43: 1235-1248. http://dx.doi.org/10.2135/cropsci2003.1235   Ocampo J, D'Eeckenbrugge GC, Bruyère S, Bellaire LL, et al. (2006). Organization of morphological and genetic diversity of Caribbean and Venezuelan papaya germplasma. Fruit 61: 25-37. http://dx.doi.org/10.1051/fruits:2006003   Oliveira EJ, Silva AS, Carvalho FM, Santos LF, et al. (2010). Polymorphic microsatellite marker set for Carica papaya L. and its use in molecular-assisted selection. Euphytica 173: 279-287. http://dx.doi.org/10.1007/s10681-010-0150-y   Parasnis AS, Ramakrishna W, Chowdari KV, Gupta VS, et al. (1999). Microsatellite (GATA) n reveals sex-specific differences in papaya. Theor. Appl. Genet. 99: 1047-1052. http://dx.doi.org/10.1007/s001220051413   Peakall R and Smouse P (2009). GenAlEx Tutorials-Part 1: Introduction to Population Genetic Analysis. Australian National University, Australia. PMCid:2690036   R Development Core Team (2006). A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna.   Reif JC, Melchinger AE and Frisch M (2005). Genetical and mathematical properties of similarity and dissimilarity coefficients applied in plant breeding and seed bank management. Crop Sci. 45: 1-7. http://dx.doi.org/10.2135/cropsci2005.0001   Rocha MC, Gonçalves LSA, Rodrigues R, Silva PRA, et al. (2010). Uso do algoritmo de Gower na determinação da divergência genética entre acessos de tomateiro do grupo cereja. Acta Sci. 32: 423-431.   Roy JK, Lakshmikumaran MS, Balyan HS and Gupta PK (2004). AFLP-based genetic diversity and its comparison with diversity based on SSR, SAMPL, and phenotypic traits in bread wheat. Biochem. Genet. 42: 43-59. http://dx.doi.org/10.1023/B:BIGI.0000012143.48298.71 PMid:15068338   Saitou N and Nei M (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-425. PMid:3447015   SAS Institute Inc. (1992). Statistical Analysis System. Release 6.12. SAS, Cary.   Saxena S, Chandra R, Srivastava AP, Mishra M, et al. (2005). Analysis of genetic diversity among papaya cultivars using Single Primer Amplification Reaction (SPAR) methods. J. Hortic. Sci. Biotech. 80: 291-296.   Silva FF, Pereira MG, Campos WF and Damasceno Júnior PC (2007). DNA marker-assisted sex conversion in elite papaya genotype (Carica papaya L.). Crop Breed. Appl. Biotechnol. 7: 52-58.   Silva FF, Pereira MG, Ramos HCC, Damasceno Júnior PC, et al. (2008). Estimation of genetic parameters related to morphoagronomic and fruit quality traits of papaya. Crop Breed. Appl. Biotechnol. 8: 65-73.   Sokal RR and Rohlf FJ (1962). The comparison of dendrograms by objective methods. Taxon 11: 33-40. http://dx.doi.org/10.2307/1217208   Sudre CP, Goncalves LS, Rodrigues R, do Amaral Junior AT, et al. (2010). Genetic variability in domesticated Capsicum spp as assessed by morphological and agronomic data in mixed statistical analysis. Genet. Mol. Res. 9: 283-294. http://dx.doi.org/10.4238/vol9-1gmr698 PMid:20198584   Van Droogenbroeck B, Breyne P, Goetghebeur P, Romeijn-Peeters E, et al. (2002). AFLP analysis of genetic relationships among papaya and its wild relatives (Caricaceae) from Ecuador. Theor. Appl. Genet. 105: 289-297. http://dx.doi.org/10.1007/s00122-002-0983-4 PMid:12582531   Venkovsky R (1987). Herança Quantitativa. In: Melhoramento e Produção do Milho. (Paterniani E and Viegas GP, eds.). Fundação Cargill, Campinas, 135-214.   Vieira EA, Carvalho FIF, Bertan I, Kopp MM, et al. (2007). Association between genetic distances in wheat (Triticum aestivum L.) as estimated by AFLP and morphological markers. Genet. Mol. Biol. 30: 392-399. http://dx.doi.org/10.1590/S1415-47572007000300016   Vitória AP, Souza Filho GA, Bressan-Smith R, Pinto FO, et al. (2004). DNA fingerprint of Carica papaya L. genotypes by RAPD markers. J. New Seeds 6: 1-10. http://dx.doi.org/10.1300/J153v06n01_04   Williams JG, Kubelik AR, Livak KJ, Rafalski JA, et al. (1990). DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res. 18: 6531-6535. http://dx.doi.org/10.1093/nar/18.22.6531 PMid:1979162 PMCid:332606
2011
H. C. C. Ramos, Pereira, M. G., Silva, F. F., Gonçalves, L. S. A., Pinto, F. O., Filho, G. Ade Souza, and Pereira, T. S. N., Genetic characterization of papaya plants (Carica papaya L.) derived from the first backcross generation, vol. 10, pp. 393-403, 2011.
Arumuganathan K and Earle ED (1991). Nuclear DNA content of some important plant species. Plant Mol. Biol. Rep. 9: 208-218. http://dx.doi.org/10.1007/BF02672069   Benchimol LL, Souza CL Jr and Souza AP (2005). Microsatellite-assisted backcross selection in maize. Genet. Mol. Biol. 28: 789-797. http://dx.doi.org/10.1590/S1415-47572005000500022   Collard BCY, Jahufer MZZ, Brouwer JB and Pang ECK (2005). An introduction to markers, quantitative trait loci (QTL) mapping and marker-assisted selection for crop improvement: the basic concepts. Euphytica 142: 169-196. http://dx.doi.org/10.1007/s10681-005-1681-5   Conover RA, Litz RE and Malo SE (1986). Cariflora, a Papaya for South Florida with Tolerance to Papaya Ringspot Virus. Agricultural Experiment Station, University of Florida (Circular, 329), Florida.   Cruz CD (2008). Programa GENES: Diversidade Genética. Universidade Federal de Viçosa, Viçosa.   Daher RF, Pereira MG, Tupinambá EA, Amaral Júnior AT, et al. (2002). Assessment of coconut tree genetic divergence by compound sample RAPD marker analysis. Crop Breed. Appl. Biotechnol. 3: 431-438.   Damasceno Junior PC, Costa FR, Pereira TNS, Freitas Neto M, et al. (2009). Karyotype determination in three Caricaceae species emphasizing the cultivated form (C. papaya L.). Caryologia 62: 10-15.   Davies J, Berzonsky WA and Leach GD (2006). A comparison of marker-assisted and phenotypic selection for high grain protein content in spring wheat. Euphytica 152: 117-134. http://dx.doi.org/10.1007/s10681-006-9185-5   Doyle JJ and Doyle JL (1990). Isolation of plant DNA from fresh tissue. Focus 12: 13-15.   Faleiro FG, Ragagnin VA, Moreira MA and de Barros EG (2004). Use of molecular markers to accelerate the breeding of common bean lines resistant to rust and anthracnose. Euphytica 138: 213-218. http://dx.doi.org/10.1023/B:EUPH.0000047080.80405.72   FAOSTAT (2009). Food and Agriculture Organization of the United Nations Statistical Database. Available at [http://faostat.fao.org/site/567/default.aspx#ancor]. Accessed August 20, 2009.   Gupta PK and Varshney RK (2000). The development and use of microsatellite markers for genetic analysis and plant breeding with emphasis on bread wheat. Euphytica 113: 163-185. http://dx.doi.org/10.1023/A:1003910819967   Hospital F and Charcosset A (1997). Marker-assisted introgression of quantitative trait loci. Genetics 147: 1469-1485. PMid:9383086 PMCid:1208267   Hospital F, Moreau L, Lacoudre H, Charcosset A, et al. (1997). More on the efficiency of marker-assisted selection. Theor. Appl. Genet. 95: 1181-1189. http://dx.doi.org/10.1007/s001220050679   Knapp SJ (1997). Marker assisted selection as a strategy for increasing the probability of selection superior genotypes. Crop Sci. 38: 1164-1174. http://dx.doi.org/10.2135/cropsci1998.0011183X003800050009x   Kuchel H, Ye G, Fox R and Jefferies S (2005). Genetic and economic analysis of a targeted marker-assisted wheat breeding strategy. Mol. Breed. 16: 67-78. http://dx.doi.org/10.1007/s11032-005-4785-7   Leal AA, Mangolin CA, do Amaral Júnior AT, Gonçalves LS, et al. (2010). Efficiency of RAPD versus SSR markers for determining genetic diversity among popcorn lines. Genet. Mol. Res. 9: 9-18. http://dx.doi.org/10.4238/vol9-1gmr692 PMid:20082266   Lewis RS and Kernodle SP (2009). A method for accelerated trait conversion in plant breeding. Theor. Appl. Genet. 118: 1499-1508. http://dx.doi.org/10.1007/s00122-009-0998-1 PMid:19266176   Liu Z, Moore PH, Ma H, Ackerman CM, et al. (2004). A primitive Y-chromosome in papaya marks incipient sex chromosome evolution. Nature 427: 348-352. http://dx.doi.org/10.1038/nature02228 PMid:14737167   Marin SLM, Pereira MG, Amaral Júnior AT, Martelleto LAP, et al. (2006). Heterosis in papaya hybrids from partial diallel of 'Solo' and 'Formosa' parents. Crop Breed. Appl. Biotechnol. 6: 24-29.   Moore PH and Ming R (2008). Papaya genome: a model for tropical fruit trees and beyond. Trop. Plant Biol. 1: 179-180. http://dx.doi.org/10.1007/s12042-008-9025-y   Oliveira EJ, Silva AS, Carvalho AM, Santos LF, et al. (2010). Polymorphic microsatellite marker set for Carica papaya L. and its use in molecular-assisted selection. Euphytica 173: 279-287. http://dx.doi.org/10.1007/s10681-010-0150-y   Oliveira LK, Melo LC, Brondani C, Peloso MJ, et al. (2008). Backcross assisted by microsatellite markers in common bean. Genet. Mol. Res. 7: 1000-1010. http://dx.doi.org/10.4238/vol7-4gmr478 PMid:19048479   Pérez OJ, Dambier D, Ollitrault P, Coppens DG, et al. (2006). Microsatellite markers in Carica papaya L.: isolation, characterization and transferability to Vasconcellea species. Mol. Ecol. Notes 6: 212-217. http://dx.doi.org/10.1111/j.1471-8286.2006.01197.x   Santos SC, Ruggiero C, Silva CLSP and Lemos GM (2003). A microsatellite library for Carica papaya L. cv Sunrise Solo. Rev. Bras. Frutic. 25: 263-267. http://dx.doi.org/10.1590/S0100-29452003000200020   Schmierer DA, Kandemir N, Kudma DA, Jone BL, et al. (2004). Molecular marker-assisted selection for enhanced yield in malting barley. Mol. Breed. 14: 463-473. http://dx.doi.org/10.1007/s11032-004-0903-1   Silva FF, Pereira MG, Campos WF, Damasceno Júnior PC, et al. (2007a). Monitoring of the genetic variability in papaya parent 'Formosa' of 'UENF/CALIMAN 01' hybrid via RAPD. Crop Breed. Appl. Biotechnol. 7: 36-42.   Silva FF, Pereira MG, Campos WF, Damasceno Júnior PC, et al. (2007b). DNA marker-assisted sex conversion in elite papaya genotype (Carica papaya L.). Crop Breed. Appl. Biotechnol. 7: 52-58.   Siqueira WJ, Fonseca MIS and Sondhal MR (1988). Regeneration of Lycopersicon esculentum x L. peruvianum hybrid plants from two year old callus culture. Bragantia 47: 1-8. http://dx.doi.org/10.1590/S0006-87051988000100001   Storey WB (1953). Genetics of the papaya. J. Heredity 44: 70-78.   Tanksley SD (1983). Molecular markers in plant breeding. Plant Mol. Biol. Rep. 1: 3-8. http://dx.doi.org/10.1007/BF02680255   Visscher PM, Haley CS and Thompson R (1996). Marker-assisted introgression in backcross breeding programs. Genetics 144: 1923-1932. PMid:8978075 PMCid:1207739   Wang J, Chen C, Na JK, Yu Q, et al. (2008). Genome-wide comparative analyses of microsatellites in papaya. Trop. Plant Biol. 1: 278-292. http://dx.doi.org/10.1007/s12042-008-9024-z   Xi ZY, He FH, Zeng RZ, Zang ZM, et al. (2008). Characterization of donor genome contents of backcross progenies detected by SSR markers in rice. Euphytica 3: 369-377. http://dx.doi.org/10.1007/s10681-007-9547-7   Young ND and Tanksley SD (1989). RFLP analysis of the size of chromosomal segments retained around the Tm-2 locus of tomato during backcross breeding. Theor. Appl. Genet. 3: 353-359. http://dx.doi.org/10.1007/BF00305828   Yu Q, Hou S, Feltus FA, Jones MR, et al. (2008). Low X/Y divergence in four pairs of papaya sex-linked genes. Plant J. 53: 124-132. http://dx.doi.org/10.1111/j.1365-313X.2007.03329.x PMid:17973896
R. S. N. de Lima, Daher, R. F., Gonçalves, L. S. A., Rossi, D. A., Júnior, A. Tdo Amaral, Pereira, M. G., and Lédo, F. J. S., RAPD and ISSR markers in the evaluation of genetic divergence among accessions of elephant grass, vol. 10, pp. 1304-1313, 2011.
Anderson WF, Dien BS, Brandon SK and Peterson JD (2008). Assessment of bermudagrass and bunch grasses as feedstock for conversion to ethanol. Appl. Biochem. Biotechnol. 145: 13-21. doi:10.1007/s12010-007-8041-y PMid:18425607 Arif M, Zaidi NW, Singh YP, Haq QMR, et al. (2009). A comparative analysis of ISSR and RAPD markers for study of genetic diversity in shisham (Dalbergia sissoo). Plant Mol. Biol. Rep. 27: 488-495. doi:10.1007/s11105-009-0097-0 Arif IA, Bakir MA, Khan HA, Al Farhan AH, et al. (2010). A brief review of molecular techniques to assess plant diversity. Int. J. Mol. Sci. 11: 2079-2096. doi:10.3390/ijms11052079 PMid:20559503    PMCid:2885095 Babu C, Sundaramoorthi J, Vijayakumar G and Ram SG (2009). Analysis of genetic diversity in napier grass (Pennisetum purpureum Schum) as detected by RAPD and ISSR markers. J. Plant Biochem. Biotechn. 18: 123-133. Behera TK, Singh AK and Staub JE (2008). Comparative analysis of genetic diversity in Indian bitter gourd (Momordica charantia L.) using RAPD and ISSR markers for developing crop improvement strategies. Sci. Hortic. 115: 209-217. doi:10.1016/j.scienta.2007.08.013 Bhandari AP, Sukanya DH and Ramesh CR (2006). Application of isozyme data in fingerprinting napiergrass (Pennisetum purpureum Schum.) for germplasm management. Genet. Resour. Crop. Evol. 53: 253-264. doi:10.1007/s10722-004-6120-2 Daher RF, Moraes CF, Pereira AV, Cruz CD, et al. (1997a). Diversidade morfológica e isozimática em capim-elefante (Pennisetum purpureum Schum.). Rev. Bras. Zootec. 26: 255-264. Daher RF, Moraes CF, Cruz CD, Pereira AV, et al. (1997b). Seleção de caracteres morfológicos discriminantes em capim-elefante (Pennisetum purpureum Schum.). Rev. Bras. Zootec. 26: 265-270. Daher RF, Pereira MG, Pereira AV and Amaral Júnior AT (2002). Genetic divergence among Elephantgrass cultivars accessed by RAPD markers in composit samples. Sci. Agric. 59: 623-627. doi:10.1590/S0103-90162002000400001 Gepts P (2006). Plant genetic resources conservation and utilization. Crop Sci. 46: 2278-2292. doi:10.2135/cropsci2006.03.0169gas Gonçalves LS, Rodrigues R, Amaral AT Jr, Karasawa M, et al. (2008). Comparison of multivariate statistical algorithms to cluster tomato heirloom accessions. Genet. Mol. Res. 7: 1289-1297. doi:10.4238/vol7-4gmr526 PMid:19065764 Gonçalves LS, Rodrigues R, do Amaral Junior AT, Karasawa M, et al. (2009). Heirloom tomato gene bank: assessing genetic divergence based on morphological, agronomic and molecular data using a Ward-modified location model. Genet. Mol. Res. 8: 364-374. doi:10.4238/vol8-1gmr549 PMid:19440972 Harris K, Anderson W and Malik R (2009). Genetic relationships among napiergrass (Pennisetum purpureum Schum.) nursery accessions using AFLP markers. Plant Genet. Resour. 8: 63-70. doi:10.1017/S1479262109990165 Jakob K, Zhou F and Paterson AH (2009). Genetic improvement of C4 grasses as cellulosic biofuel feedstocks. In Vitro Cell Dev. Biol. Plant 45: 291-305. doi:10.1007/s11627-009-9214-x Leal AA, Mangolin CA, do Amaral ATJ, Goncalves LS, et al. (2010). Efficiency of RAPD versus SSR markers for determining genetic diversity among popcorn lines. Genet. Mol. Res. 9: 9-18. doi:10.4238/vol9-1gmr692 PMid:20082266 Lee MK, Tsai WT, Tsai YL and Lin SH (2010). Pyrolysis of napier grass in an induction-heating reactor. J. Anal. Appl. Pyr. 88: 110-116. doi:10.1016/j.jaap.2010.03.003 Lowe AJ, Thorpe W, Teale A and Hanson J (2003). Characterization of germplasm accessions of Napier grass (Pennisetum purpureum and P. purpereum x P. glaucum hybrids) and comparison with farm clones using RAPD. Genet. Resour. Crop Evol. 50: 121-132. doi:10.1023/A:1022915009380 Mohammadi SA and Prasanna BM (2003). Analysis of genetic diversity in crop plants - salient statistical tools and considerations. Crop Sci. 43: 1235-1248. doi:10.2135/cropsci2003.1235 Morais RF, Souza BJ, Leite JM, Soares LHB, et al. (2009). Elephant grass genotypes for bioenergy production by direct biomass combustion. Pesq. Agropec. Bras. 44: 133-140. doi:10.1590/S0100-204X2009000200004 Muthusamy S, Kanagarajan S and Ponnusamy S (2008). Efficiency of RAPD and ISSR markers system in accessing genetic variation of rice bean (Vigna umbellate) landraces. Electron. J. Biotech. 11: 1-10. doi:10.2225/vol11-issue3-fulltext-8 Oliveira EC, Amaral Junior AT, Goncalves LS, Pena GF, et al. (2010). Optimizing the efficiency of the touchdown technique for detecting inter-simple sequence repeat markers in corn (Zea mays). Genet. Mol. Res. 9: 835-842. doi:10.4238/vol9-2gmr767 PMid:20449816 Passos LP, Machado MA, Vidigal MC and Campos AL (2005). Molecular characterization of elephantgrass accessions through RAPD markers. Ciênc. Agro. . 29: 568-574. Pereira AV, Machado MA, Campos AL, Ledo FJS, et al. (2008). Diversidade genética entre acessos de capim-elefante obtida com marcadores moleculares. Rev. Bras. Zootec. 37: 1216-1221. doi:10.1590/S1516-35982008000700011 Sanderson MA, Reed RL, McLaughlin SB, Wullschleger SD, et al. (1996). Switchgrass as a sustainable bioenergy crop. Bioresour. Technol. 56: 83-93. doi:10.1016/0960-8524(95)00176-X Shimoya A, Cruz CD, Ferreira RP, Pereira AV, et al. (2002). Divergência genética entre acessos de um banco de germoplasma de capim-elefante. Pesq. Agropec. Bras. 37: 971-980. doi:10.1590/S0100-204X2002000700011 Smith RL, Schweder ME, Chowdhury MKU, Seib JC, et al. (1993). Development and application of RFLP and RAPD DNA markers in genetic improvement Pennisetum for biomass and forage production. Biomass Bioenergy 5: 51-62. doi:10.1016/0961-9534(93)90007-Q Strezov V, Evans TJ and Hayman C (2008). Thermal conversion of elephant grass (Pennisetum purpureum Schum) to bio-gas, bio-oil and charcoal. Bioresour. Technol. 99: 8394-8399. doi:10.1016/j.biortech.2008.02.039 PMid:18406608 Struwig M, Mienie CMS, Van den Berg J, Mucina L, et al. (2009). AFLPs are incompatible with RAPD and morphological data in Pennisetum purpureum (Napier grass). Biochem. Syst. Ecol. 37: 645-652. doi:10.1016/j.bse.2009.09.010 Sudré CP, Goncalves LS, Rodrigues R, do Amaral Junior AT, et al. (2010). Genetic variability in domesticated Capsicum spp as assessed by morphological and agronomic data in mixed statistical analysis. Genet. Mol. Res. 9: 283-294. doi:10.4238/vol9-1gmr698 PMid:20198584 Williams JG, Kubelik AR, Livak KJ, Rafalski JA, et al. (1990). DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res. 18: 6531-6535. doi:10.1093/nar/18.22.6531 PMid:1979162    PMCid:332606
A. P. C. G. Berilli, Pereira, M. G., Gonçalves, L. S. A., da Cunha, K. S., Ramos, H. C. C., Filho, G. A. Souza, and Júnior, A. Tdo Amaral, Use of molecular markers in reciprocal recurrent selection of maize increases heterosis effects, vol. 10, pp. 2589-2596, 2011.
Agarwal M, Shrivastava N and Padh H (2008). Advances in molecular marker techniques and their applications in plant sciences. Plant Cell Rep. 27: 617-631. http://dx.doi.org/10.1007/s00299-008-0507-z PMid:18246355 Buckler ES, Gaut BS and McMullen MD (2006). Molecular and functional diversity of maize. Curr. Opin. Plant Biol. 9: 172-176. http://dx.doi.org/10.1016/j.pbi.2006.01.013 PMid:16459128 Collard BC and Mackill DJ (2008). Marker-assisted selection: an approach for precision plant breeding in the twenty-first century. Philos. Trans. R. Soc. Lond B Biol. Sci. 363: 557-572. http://dx.doi.org/10.1098/rstb.2007.2170 PMid:17715053    PMCid:2610170 Comstock RE and Robinson HF (1948). The components of genetic variance in populations of biparental progenies and their use in estimating the average degree of dominance. Biometrics 4: 254-266. http://dx.doi.org/10.2307/3001412 PMid:18108899 Cruz CD (2006). GENES Software: Version Windows: Computerapplication in Genetics and Statistics. Federal University of Viçosa, Viçosa. Daher RF, Pereira MG, Pereira AV and do Amaral Júnior AT (2002). Genetic divergence among Elephantgrass cultivars assessed by RAPD markers in composit samples. Sci. Agric. 59: 623-627. http://dx.doi.org/10.1590/S0103-90162002000400001 Doyle JJ and Doyle JL (1990). Isolation of plant DNA from fresh tissue. Focus 12: 13-15. Gabriel APC (2006). Seleção Recorrente Recíproca em Famílias de Irmãos Completos em Milho (Zea mays L.) Assistida por Marcadores Moleculares. Master’s thesis, UENF, Campos dos Goytacazes. Gabriel APC (2009). Seleção Recorrente Recíproca de Famílias de Irmãos Completos em Milho Comum (Zea mays L.) Monitorada por Marcadores Moleculares: Avanço de Gerações e Avaliação de Progresso Genético. Master’s thesis,UENF, Campos dos Goytacazes. Gonçalves LS, Rodrigues R, Amaral AT Jr, Karasawa M, et al. (2008). Comparison of multivariate statistical algorithms to cluster tomato heirloom accessions. Genet. Mol. Res. 7: 1289-1297. http://dx.doi.org/10.4238/vol7-4gmr526 PMid:19065764 Hallauer AR and Miranda Filho JB (1988). Quantitative in Maize Breeding. 2nd edn. Iowa State University Press, Ames. Leal AA, Mangolin CA, do Amaral ATJ, Goncalves LS, et al. (2010). Efficiency of RAPD versus SSR markers for determining genetic diversity among popcorn lines. Genet. Mol. Res. 9: 9-18. http://dx.doi.org/10.4238/vol9-1gmr692 PMid:20082266 Lima Neto FP and Souza Júnior CL (2009). Number of recombinations and genetic properties of a maize population undergoing recurrent selection. Sci. Agric. 66: 52-58. http://dx.doi.org/10.1590/S0103-90162009000100007 Mohammadi SA and Prasanna BM (2003). Analysis of genetic diversity in crop plants - salient statistical tools and considerations. Crop Sci. 43: 1235-1248. http://dx.doi.org/10.2135/cropsci2003.1235 Moose SP and Mumm RH (2008). Molecular plant breeding as the foundation for 21st century crop improvement. Plant Physiol. 147: 969-977. http://dx.doi.org/10.1104/pp.108.118232 PMid:18612074    PMCid:2442525 Pinto LR, Vieira MLC, Souza CL and Souza AP (2003a). Genetic-diversity assessed by microsatellites in tropical maize populations submitted to a high-intensity reciprocal recurrent selection. Euphytica 134: 277-286. http://dx.doi.org/10.1023/B:EUPH.0000004946.15260.4a Pinto LR, Vieira MLC, Souza CL and Souza AP (2003b). Reciprocal recurrent selection effects on the genetic structure of tropical maize populations assessed at microsatellite loci. Genet. Mol. Biol. 26: 355-364. http://dx.doi.org/10.1590/S1415-47572003000300022 Reif JC, Melchinger AE and Frisch M (2005). Genetical and mathematical properties of similarity and dissimilarity coefficients applied in plant breeding and seed bank management. Crop Sci. 45: 1-7. http://dx.doi.org/10.2135/cropsci2005.0001 Tardin FD, Pereira MG, Gabriel APC, do Amaral Júnior AT, et al. (2007). Selection index and molecular markers in reciprocal recurrent selection in maize. Crop Breed. Appl. Biotechnol. 7: 225-233. Williams JG, Kubelik AR, Livak KJ, Rafalski JA, et al. (1990). DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res. 18: 6531-6535. http://dx.doi.org/10.1093/nar/18.22.6531 PMid:1979162    PMCid:332606
2010
E. C. Oliveira, Júnior, A. T. Amaral, Gonçalves, L. S. A., Pena, G. F., Júnior, S. P. Freitas, Ribeiro, R. M., and Pereira, M. G., Optimizing the efficiency of the touchdown technique for detecting inter-simple sequence repeat markers in corn (Zea mays), vol. 9, pp. 835-842, 2010.
Bernardo R (2008). Molecular markers and selection for complex traits in plants: learning from the last 20 years. Crop Sci. 48: 1649-1664. http://dx.doi.org/10.2135/cropsci2008.03.0131   Caixeta ET, Oliveira ACB, Brito GG and Sakiyama NS (2006). Tipos de Marcadores Moleculares. In: Marcadores Moleculares (Borém A and Caixeta ET, eds.). Universidade Federal de Viçosa, Viçosa, 9-78.   Carvalho VP, Ruas PM, Ruas CF, Ferreira JM, et al. (2002). Assessment of genetic diversity in maize (Zea mays L.) landraces using inter simple sequence repeat (ISSR) markers. Crop Breed. Appl. Biotechnol. 2: 557-568.   Daher RF, Pereira MG, Tupinamba EA, Amaral Júnior AT, et al. (2002). Assessment of coconut tree genetic divergence by compound sample RAPD marker analysis. Crop Breed. Appl. Biotechnol. 3: 431-438.   Debnath SC (2007). Inter-simple sequence repeat (ISSR)-PCR analysis to assess genetic diversity in a collection of wild cloudberry (Rubus chamaemorus L.) clones. J. Hort. Sci. Biotechnol. 82: 727-732.   Don RH, Cox PT, Wainwright BJ, Baker K, et al. (1991). 'Touchdown' PCR to circumvent spurious priming during gene amplification. Nucleic Acids Res. 19: 4008. http://dx.doi.org/10.1093/nar/19.14.4008 PMid:1861999 PMCid:328507   Doyle JJ and Doyle JL (1990). Isolation of plant DNA from fresh tissue. Focus 12: 13-15.   Eathington SR, Crosbie TM, Edwards MD, Reiter RS, et al. (2007). Molecular markers in a commercial breeding program. Crop Sci. 47: S154-S163. http://dx.doi.org/10.2135/cropsci2007.04.0015IPBS   Fernandez ME, Figueiras AM and Benito C (2002). The use of ISSR and RAPD markers for detecting DNA polymorphism, genotype identification and genetic diversity among barley cultivars with known origin. Theor. Appl. Genet. 104: 845-851. http://dx.doi.org/10.1007/s00122-001-0848-2 PMid:12582645   Gonçalves LS, Rodrigues R, do Amaral Junior AT, Karasawa M, et al. (2009). Heirloom tomato gene bank: assessing genetic divergence based on morphological, agronomic and molecular data using a Ward-modified location model. Genet. Mol. Res. 8: 364-374. http://dx.doi.org/10.4238/vol8-1gmr549 PMid:19440972   Hyndman DL and Mitsuhashi M (2003). PCR primer design. Methods Mol. Biol. 226: 81-88. PMid:12958488   Kantety RV, Zeng X, Bennetzen J and Zehr BE (1995). Assessment of genetic diversity in dent and popcorn (Zea mays L.) inbred lines using inter-simple sequence repeat (ISSR) amplification. Mol. Breed. 1: 365-373. http://dx.doi.org/10.1007/BF01248414   Kubista M, Andrade JM, Bengtsson M, Forootan A, et al. (2006). The real-time polymerase chain reaction. Mol. Aspects Med. 27: 95-125. http://dx.doi.org/10.1016/j.mam.2005.12.007 PMid:16460794   Market C and Moller F (1959). Multiple forms of enzymes: Tissue, autogene and species patterns. Proc. Nat. Acad. Sci. 45: 753-763. http://dx.doi.org/10.1073/pnas.45.5.753   Martins M, Tenreiro R and Oliveira MM (2003). Genetic relatedness of Portuguese almond cultivars assessed by RAPD and ISSR markers. Plant Cell Rep. 22: 71-78. http://dx.doi.org/10.1007/s00299-003-0659-9 PMid:12827440   Martins M, Sarmento D and Oliveira MM (2004). Genetic stability of micropropagated almond plantlets, as assessed by RAPD and ISSR markers. Plant Cell Rep. 23: 492-496. http://dx.doi.org/10.1007/s00299-004-0870-3 PMid:15372197   Mullis KB and Faloona FA (1987). Specific synthesis of DNA in vitro via a polymerase-catalyzed chain reaction. Methods Enzymol. 155: 335-350. http://dx.doi.org/10.1016/0076-6879(87)55023-6   Reddy MP, Sarla N and Siddiq EA (2002). Inter simple sequence repeat (ISSR) polymorphism and its application in plant breeding. Euphytica 128: 9-17. http://dx.doi.org/10.1023/A:1020691618797   Roux KH (1995). Optimization and troubleshooting in PCR. PCR Methods Appl. 4: S185-S194. http://dx.doi.org/10.1101/gr.4.5.S185 PMid:7580907   Schlötterer C (2004). The evolution of molecular markers - just a matter of fashion? Nat. Rev. Genet. 5: 63-69. http://dx.doi.org/10.1038/nrg1249 PMid:14666112   Schulman AH (2007). Molecular markers to assess genetic diversity. Euphytica 158: 313-321. http://dx.doi.org/10.1007/s10681-006-9282-5   Zietkiewicz E, Rafalski A and Labuda D (1994). Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification. Genomics 20: 176-183. http://dx.doi.org/10.1006/geno.1994.1151 PMid:8020964