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2016
N. M. Duc, Duy, V. D., Xuan, B. T. T., Thang, B. V., Ha, N. T. H., Tam, N. M., Duc, N. M., Duy, V. D., Xuan, B. T. T., Thang, B. V., Ha, N. T. H., and Tam, N. M., Genetic structure of the threatened Dipterocarpus costatus populations in lowland tropical rainforests of southern Vietnam, vol. 15, no. 4, p. -, 2016.
ACKNOWLEDGMENTSResearch supported by grant provided to M.D. Nguyen (#VAST.BVMT.01/15-16; Grantee D/5766-1).REFERENCESAbasolo M, Fernando ES, Borromeo TH, Hautea DM, et al (2009). Cross-species amplification of Shorea microsatellite DNA markers in Parashorea malaanonan (Dipterocarpaceae). Philipp. J. Sci. 138: 23-28. Appanah S, Chan HT, et al (1981). Thrips: the pollinators of some dipterocarps. Malaysia For. 44: 234-252. Ashton P (1998). The IUCN red list of threatened species. Version 2014.3. Cao CP, Gailing O, Siregar IZ, Siregar UJ, et al (2009). Genetic variation in nine Shorea species (Dipterocarpaceae) in Indonesia by AFLPs. Tree Genet. Genomes 5: 407-420. http://dx.doi.org/10.1007/s11295-008-0195-4 Chan HT, et al (1980). Reproductive biology of some Malaysia dipterocarps. II. Fruiting biology and seeling studies. Malay. For. 43: 438-451 .http://dx.doi.org/10.1007/s112954 Doyle JJ, Doyle JL, et al (1987). A rapid DNA isolation procedure for small qualities of fresh leaf tissue. Phytochem. Bull. 19: 11-15. Earl DA, von-Holdt BM, et al (2012). Structure Harvester: a website and program for visualizing structure output and implementing the Evanno method. Conserv. Genet. Resour. 4: 359-361. http://dx.doi.org/10.1007/s12686-011-9548-7 Evanno G, Regnaut S, Goudet J, et al (2005). Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol. Ecol. 14: 2611-2620. http://dx.doi.org/10.1111/j.1365-294X.2005.02553.x Excoffier L, Laval G, Schneider S, et al (2007). Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evol. Bioinform. Online 1: 47-50. Fukue Y, Kado T, Lee SL, Ng KK, et al (2007). Effects of flowering tree density on the mating system and gene flow in Shorea leprosula (Dipterocarpaceae) in Peninsular Malaysia. J. Plant Res. 120: 413-420. http://dx.doi.org/10.1007/s10265-007-0078-z Goudet J (2001). FSTAT, a program to estimate and test gene diversities and fixation indices (version 2.9.3). Available at [http://www.unil.ch/izea/softwares/fstat.html]. Isagi V, Kenta T, Nakashizuka T, et al (2002). Microsatellite loci for a tropical emergent tree, Dipterocarpus tempehes V. S1 (Dipterocarpaceae). Mol. Ecol. Notes 2: 12-13. http://dx.doi.org/10.1046/j.1471-8286.2002.00127.x Iwata H, Konuma A, Tsumura Y, et al (2000). Development of microsatellite markers in the tropical tree Neobalanocarpus heimii (Dipterocarpaceae). Mol. Ecol. 9: 1684-1685. http://dx.doi.org/10.1046/j.1365-294x.2000.01058-15.x Lim LS, Wickneswari R, Lee SL and Latiff A (2001). Genetic structure of natural populations of Dryobalanops aromatic Gaertn. F. (Dipterocarpaceae) in peninsular Malaysia using microsatellite DNA markers. In: In-situ and ex-situ conservation of commercial tropical trees (Thielges BA, Sastrapradja SD and Rimbawanto A, eds.). Gadjah Mada University, Yogyekarta, 309-324. Luikart G, Allendorf FW, Cornuet JM, Sherwin WB, et al (1998). Distortion of allele frequency distributions provides a test for recent population bottlenecks. J. Hered. 89: 238-247. http://dx.doi.org/10.1093/jhered/89.3.238 Nei M, Tajima F, Tateno Y, et al (1983). Accuracy of estimated phylogenetic trees from molecular data. II. Gene frequency data. J. Mol. Evol. 19: 153-170. http://dx.doi.org/10.1007/BF02300753 Ng KK, Lee SL and Koh CL (2004). Spatial structure and genetic diversity of two tropical tree species with contrasting breeding systems and different ploidy levels. Mol. Ecol. 13: 657-669. doi: http://dx.doi.org/10.1046/j.1365-294X.2004.0294.x, 1-13. Pandey M, Geburek T, et al (2009). Successful cross-amplification of Shorea microsatellites reveals genetic variation in the tropical tree, Shorea robusta Gaertn. Hereditas 146: 29-32. http://dx.doi.org/10.1111/j.1601-5223.2009.02070.x Peakall R, Smouse PE, et al (2006). Genalex 6: genetic analysis in excel. Population genetic software for teaching and research. Mol. Ecol. Notes 6: 288-295. http://dx.doi.org/10.1111/j.1471-8286.2005.01155.x Piry S, Luikart G, Cornuet JM, et al (1999). BOTTLENECK: a computer program for detecting recent reductions in the effective population size using allele frequency data. J. Hered. 90: 502-503. http://dx.doi.org/10.1093/jhered/90.4.502 Pritchard JK, Stephens M, Donnelly P, et al (2000). Inference of population structure using multilocus genotype data. Genetics 155: 945-959. Takeuchi Y, Ichikawa S, Konuma A, Tomaru N, et al (2004). Comparison of the fine-scale genetic structure of three dipterocarp species. Heredity (Edinb) 92: 323-328. http://dx.doi.org/10.1038/sj.hdy.6800411 Takezaki N, Nei M, Tamura K, et al (2010). POPTREE2: Software for constructing population trees from allele frequency data and computing other population statistics with Windows interface. Mol. Biol. Evol. 27: 747-752. http://dx.doi.org/10.1093/molbev/msp312 Tam NM, Duy VD, Duc NM, Giap VD, et al (2014). Genetic variation in and spatial structure of natural populations of Dipterocarpus alatus (Dipterocarpaceae) determined using single sequence repeat markers. Genet. Mol. Res. 13: 5378-5386. http://dx.doi.org/10.4238/2014.July.24.17 Terauchi R, et al (1994). A polymorphic microsatellite marker from the tropical tree Dryobalanops lanceolata (Dipterocarpaceae). Jpn. J. Genet. 69: 567-576. http://dx.doi.org/10.1266/jjg.69.567 Trang NTP, Huong TT, Duc NM, Sierens T, et al (2014). Genetic population of threatened Hopea odorata Roxb. in the protected areas of Vietnam. J. Viet. Env. 6: 69-76 .http://dx.doi.org/10.13141/jve Ujino T, Kawahara T, Tsumura Y, Nagamitsu T, et al (1998). Development and polymorphism of simple sequence repeat DNA markers for Shorea curtisii and other Dipterocarpaceae species. Heredity (Edinb) 81: 422-428. http://dx.doi.org/10.1046/j.1365-2540.1998.00423.x Van Oosterhout C, Hutchinson WF, Wills DPM, Shipley DF, et al (2004). Micro-Checker: software for identifying and correcting genotyping errors in microsatellite data. Mol. Ecol. Notes 4: 535-538. http://dx.doi.org/10.1111/j.1471-8286.2004.00684.x  
N. M. Duc, Duy, V. D., Xuan, B. T. T., Thang, B. V., Ha, N. T. H., Tam, N. M., Duc, N. M., Duy, V. D., Xuan, B. T. T., Thang, B. V., Ha, N. T. H., and Tam, N. M., Genetic structure of the threatened Dipterocarpus costatus populations in lowland tropical rainforests of southern Vietnam, vol. 15, no. 4, p. -, 2016.
ACKNOWLEDGMENTSResearch supported by grant provided to M.D. Nguyen (#VAST.BVMT.01/15-16; Grantee D/5766-1).REFERENCESAbasolo M, Fernando ES, Borromeo TH, Hautea DM, et al (2009). Cross-species amplification of Shorea microsatellite DNA markers in Parashorea malaanonan (Dipterocarpaceae). Philipp. J. Sci. 138: 23-28. Appanah S, Chan HT, et al (1981). Thrips: the pollinators of some dipterocarps. Malaysia For. 44: 234-252. Ashton P (1998). The IUCN red list of threatened species. Version 2014.3. Cao CP, Gailing O, Siregar IZ, Siregar UJ, et al (2009). Genetic variation in nine Shorea species (Dipterocarpaceae) in Indonesia by AFLPs. Tree Genet. Genomes 5: 407-420. http://dx.doi.org/10.1007/s11295-008-0195-4 Chan HT, et al (1980). Reproductive biology of some Malaysia dipterocarps. II. Fruiting biology and seeling studies. Malay. For. 43: 438-451 .http://dx.doi.org/10.1007/s112954 Doyle JJ, Doyle JL, et al (1987). A rapid DNA isolation procedure for small qualities of fresh leaf tissue. Phytochem. Bull. 19: 11-15. Earl DA, von-Holdt BM, et al (2012). Structure Harvester: a website and program for visualizing structure output and implementing the Evanno method. Conserv. Genet. Resour. 4: 359-361. http://dx.doi.org/10.1007/s12686-011-9548-7 Evanno G, Regnaut S, Goudet J, et al (2005). Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol. Ecol. 14: 2611-2620. http://dx.doi.org/10.1111/j.1365-294X.2005.02553.x Excoffier L, Laval G, Schneider S, et al (2007). Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evol. Bioinform. Online 1: 47-50. Fukue Y, Kado T, Lee SL, Ng KK, et al (2007). Effects of flowering tree density on the mating system and gene flow in Shorea leprosula (Dipterocarpaceae) in Peninsular Malaysia. J. Plant Res. 120: 413-420. http://dx.doi.org/10.1007/s10265-007-0078-z Goudet J (2001). FSTAT, a program to estimate and test gene diversities and fixation indices (version 2.9.3). Available at [http://www.unil.ch/izea/softwares/fstat.html]. Isagi V, Kenta T, Nakashizuka T, et al (2002). Microsatellite loci for a tropical emergent tree, Dipterocarpus tempehes V. S1 (Dipterocarpaceae). Mol. Ecol. Notes 2: 12-13. http://dx.doi.org/10.1046/j.1471-8286.2002.00127.x Iwata H, Konuma A, Tsumura Y, et al (2000). Development of microsatellite markers in the tropical tree Neobalanocarpus heimii (Dipterocarpaceae). Mol. Ecol. 9: 1684-1685. http://dx.doi.org/10.1046/j.1365-294x.2000.01058-15.x Lim LS, Wickneswari R, Lee SL and Latiff A (2001). Genetic structure of natural populations of Dryobalanops aromatic Gaertn. F. (Dipterocarpaceae) in peninsular Malaysia using microsatellite DNA markers. In: In-situ and ex-situ conservation of commercial tropical trees (Thielges BA, Sastrapradja SD and Rimbawanto A, eds.). Gadjah Mada University, Yogyekarta, 309-324. Luikart G, Allendorf FW, Cornuet JM, Sherwin WB, et al (1998). Distortion of allele frequency distributions provides a test for recent population bottlenecks. J. Hered. 89: 238-247. http://dx.doi.org/10.1093/jhered/89.3.238 Nei M, Tajima F, Tateno Y, et al (1983). Accuracy of estimated phylogenetic trees from molecular data. II. Gene frequency data. J. Mol. Evol. 19: 153-170. http://dx.doi.org/10.1007/BF02300753 Ng KK, Lee SL and Koh CL (2004). Spatial structure and genetic diversity of two tropical tree species with contrasting breeding systems and different ploidy levels. Mol. Ecol. 13: 657-669. doi: http://dx.doi.org/10.1046/j.1365-294X.2004.0294.x, 1-13. Pandey M, Geburek T, et al (2009). Successful cross-amplification of Shorea microsatellites reveals genetic variation in the tropical tree, Shorea robusta Gaertn. Hereditas 146: 29-32. http://dx.doi.org/10.1111/j.1601-5223.2009.02070.x Peakall R, Smouse PE, et al (2006). Genalex 6: genetic analysis in excel. Population genetic software for teaching and research. Mol. Ecol. Notes 6: 288-295. http://dx.doi.org/10.1111/j.1471-8286.2005.01155.x Piry S, Luikart G, Cornuet JM, et al (1999). BOTTLENECK: a computer program for detecting recent reductions in the effective population size using allele frequency data. J. Hered. 90: 502-503. http://dx.doi.org/10.1093/jhered/90.4.502 Pritchard JK, Stephens M, Donnelly P, et al (2000). Inference of population structure using multilocus genotype data. Genetics 155: 945-959. Takeuchi Y, Ichikawa S, Konuma A, Tomaru N, et al (2004). Comparison of the fine-scale genetic structure of three dipterocarp species. Heredity (Edinb) 92: 323-328. http://dx.doi.org/10.1038/sj.hdy.6800411 Takezaki N, Nei M, Tamura K, et al (2010). POPTREE2: Software for constructing population trees from allele frequency data and computing other population statistics with Windows interface. Mol. Biol. Evol. 27: 747-752. http://dx.doi.org/10.1093/molbev/msp312 Tam NM, Duy VD, Duc NM, Giap VD, et al (2014). Genetic variation in and spatial structure of natural populations of Dipterocarpus alatus (Dipterocarpaceae) determined using single sequence repeat markers. Genet. Mol. Res. 13: 5378-5386. http://dx.doi.org/10.4238/2014.July.24.17 Terauchi R, et al (1994). A polymorphic microsatellite marker from the tropical tree Dryobalanops lanceolata (Dipterocarpaceae). Jpn. J. Genet. 69: 567-576. http://dx.doi.org/10.1266/jjg.69.567 Trang NTP, Huong TT, Duc NM, Sierens T, et al (2014). Genetic population of threatened Hopea odorata Roxb. in the protected areas of Vietnam. J. Viet. Env. 6: 69-76 .http://dx.doi.org/10.13141/jve Ujino T, Kawahara T, Tsumura Y, Nagamitsu T, et al (1998). Development and polymorphism of simple sequence repeat DNA markers for Shorea curtisii and other Dipterocarpaceae species. Heredity (Edinb) 81: 422-428. http://dx.doi.org/10.1046/j.1365-2540.1998.00423.x Van Oosterhout C, Hutchinson WF, Wills DPM, Shipley DF, et al (2004). Micro-Checker: software for identifying and correcting genotyping errors in microsatellite data. Mol. Ecol. Notes 4: 535-538. http://dx.doi.org/10.1111/j.1471-8286.2004.00684.x