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2016
K. Guenni, Aouadi, M., Chatti, K., Salhi-Hannachi, A., Guenni, K., Aouadi, M., Chatti, K., and Salhi-Hannachi, A., Analysis of genetic diversity of Tunisian pistachio (Pistacia vera L.) using sequence-related amplified polymorphism (SRAP) markers, vol. 15, no. 4, p. -, 2016.
Conflicts of interestThe authors declare no conflict of interest.ACKNOWLEDGMENTSThe authors would like to thank the Regional Commissions for Agricultural Development (CRDA), the officials of two experimental stations: Chenchou (Gabès) and Taous (Sfax), and the National Research Institute for Rural Engineering, Water and Forests (INRGREF) for carrying out sampling and for conducting this research project. Research supported by grants from the Tunisian Ministry of Higher Education, Scientific Research.REFERENCESAlghamdi SS, Al-Faifi SA, Migdadi HM, Khan MA, et al (2012). Molecular diversity assessment using sequence related amplified polymorphism (SRAP) markers in Vicia faba L. Int. J. Mol. Sci. 13: 16457-16471. http://dx.doi.org/10.3390/ijms131216457 Basha AI, Padulosi S, Chabane K, Hadj-hassan A, et al (2007). Genetic diversity of Syrian pistachio (Pistacia vera L.) varieties evaluated by AFLP markers. Genet. Resour. Crop Evol. 54: 1807-1816. http://dx.doi.org/10.1007/s10722-006-9202-5 Beaumont MA, Balding DJ, et al (2004). Identifying adaptive genetic divergence among populations from genome scans. Mol. Ecol. 13: 969-980. http://dx.doi.org/10.1111/j.1365-294X.2004.02125.x Botstein D, White RL, Skolnick M, Davis RW, et al (1980). Construction of a genetic linkage map in man using restriction fragment length polymorphisms. Am. J. Hum. Genet. 32: 314-331. Chaabouni AC, et al (2013). Capacité germinative et composition minérale du pollen de quelques génotypes mâles de pistachier (Pistacia vera L.). Revue des Régions Arides. 35: 329-335. Earl DA, vonHoldt BM, et al (2012). STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method. Conserv. Genet. Resour. 4: 359-361. http://dx.doi.org/10.1007/s12686-011-9548-7 Esfandiyari B, Davarynejad GH, Shahriari F, Kiani M, et al (2012). Data to the sex determination in Pistacia species using molecular markers. Euphytica 185: 227-231. http://dx.doi.org/10.1007/s10681-011-0527-6 Evanno G, Regnaut S, Goudet J, et al (2005). Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol. Ecol. 14: 2611-2620. http://dx.doi.org/10.1111/j.1365-294X.2005.02553.x Foll M, Gaggiotti O, et al (2008). A genome-scan method to identify selected loci appropriate for both dominant and codominant markers: a Bayesian perspective. Genetics 180: 977-993. http://dx.doi.org/10.1534/genetics.108.092221 Hammer Ø, Harper DAT, Ryan PD, et al (2001). PAST: Paleontological statistics software package for education and data analysis. Palaeontol. Electronica 4: 9. Hormaza JI, Dollo L, Polito VS, et al (1994). Identification of a RAPD marker linked to sex determination in Pistacia vera using bulked segregant analysis. Theor. Appl. Genet. 89: 9-13. http://dx.doi.org/10.1007/BF00226975 Jakobsson M, Rosenberg NA, et al (2007). CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure. Bioinformatics 23: 1801-1806. http://dx.doi.org/10.1093/bioinformatics/btm233 Jeffreys H (1961). Theory of Probability. In: Oxford Classic Texts in the Physical Sciences. Oxford University Press, Oxford, United Kingdom. Karp A, Kresovich S, Bhat KV, Ayad WG, et al. (1997). Molecular tools in plant genetic resources conservation: A guide to the technologies. IPGRI Technical Bulletin No. 2. International Plant Genetic Resources Institute, Rome, Italy. Krauss SL, Sinclair EA, Bussell JD, Hobbs RJ, et al (2013). An ecological genetic delineation of local seed-source provenance for ecological restoration. Ecol. Evol. 3: 2138-2149. http://dx.doi.org/10.1002/ece3.595 Li G, Quiros CF, et al (2001). Sequence-related amplified polymorphism (SRAP), a new marker system based on a simple PCR reaction: Its application to mapping and gene tagging in Brassica. Theor. Appl. Genet. 103: 455-461. http://dx.doi.org/10.1007/s001220100570 Li G, McVetty BE and Quiros CF (2013). SRAP Molecular Marker Technology in Plant Science. In: Plant Breeding from Laboratories to Fields (Andersen SV, eds.). Copenhagen University, Denmark. McDermott JM, McDonald BA, et al (1993). Gene flow in plant pathosystems. Annu. Rev. Phytopathol. 31: 353-373. http://dx.doi.org/10.1146/annurev.py.31.090193.002033 Mutlu N, Boyaci FH, Göçmen M, Abak K, et al (2008). Development of SRAP, SRAP-RGA, RAPD and SCAR markers linked with a Fusarium wilt resistance gene in eggplant. Theor. Appl. Genet. 117: 1303-1312. http://dx.doi.org/10.1007/s00122-008-0864-6 Nei M, et al (1973). Analysis of gene diversity in subdivided populations. Proc. Natl. Acad. Sci. USA 70: 3321-3323. http://dx.doi.org/10.1073/pnas.70.12.3321 Nei M, et al (1977). F-statistics and analysis of gene diversity in subdivided populations. Ann. Hum. Genet. 41: 225-233. http://dx.doi.org/10.1111/j.1469-1809.1977.tb01918.x Pazouki L, Mardi M, Shanjani PS, Hagidimitriou M, et al (2010). Genetic diversity and relationships among Pistacia species and cultivars. Conserv. Genet. 11: 311-318. http://dx.doi.org/10.1007/s10592-009-9812-5 Peakall R, Smouse PE, et al (2012). GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research--an update. Bioinformatics 28: 2537-2539. http://dx.doi.org/10.1093/bioinformatics/bts460 Perrier X and Jacquemoud-Collet JP (2006). DARwin Software. Available at [http://darwin.cirad.fr/darwin]. Poczai P, Varga I, Laos M, Cseh A, et al (2013). Advances in plant gene-targeted and functional markers: a review. Plant Methods 9: 6. http://dx.doi.org/10.1186/1746-4811-9-6 Prevost A, Wilkinson MJ, et al (1999). A new system of comparing PCR primers applied to ISSR fingerprinting of potato cultivars. Theor. Appl. Genet. 98: 107-112. http://dx.doi.org/10.1007/s001220051046 Pritchard JK, Stephens M, Donnelly P, et al (2000). Inference of population structure using multilocus genotype data. Genetics 155: 945-959. R Development Core Team (2013). R: A Language and Environment for Statistical Computing. Version 3.0.1. R Foundation for Statistical Computing, Vienna, Austria. Robarts DWH, Wolfe AD, et al (2014). Sequence-related amplified polymorphism (SRAP) markers: A potential resource for studies in plant molecular biology(1.). Appl. Plant Sci. 2: 1400017. http://dx.doi.org/10.3732/apps.1400017 Rosenberg NA, et al (2004). DISTRUCT: a program for the graphical display of population. Mol. Ecol. Notes 4: 137-138. http://dx.doi.org/10.1046/j.1471-8286.2003.00566.x Saha GC, Sarker A, Chen W, Vandemark GJ, et al (2010). Inheritance and Linkage Map Positions of Genes Conferring Resistance to Stemphylium Blight in Lentil. Crop Sci. 50: 1831-1839. http://dx.doi.org/10.2135/cropsci2009.12.0709 Sun Q, Yang X, Li R, et al (2014). SCAR marker for sex identification of Pistacia chinensis Bunge (Anacardiaceae). Genet. Mol. Res. 13: 1395-1401. http://dx.doi.org/10.4238/2014.February.28.12 Shanjani PS, Mardi M, Pazouki L, Hagidimitriou M, et al (2009). Analysis of the molecular variation between and within cultivated and wild Pistacia species using AFLPs. Tree Genet. Genomes 3: 447-458. http://dx.doi.org/10.1007/s11295-008-0198-1 Smith JSC, Chin ECL, Shu H, Smith OS, et al (1997). An evaluation of the utility of SSR loci as molecular markers in maize (Zea mays L.): comparisons with data from RFLPs and pedigree. Theor. Appl. Genet. 95: 163-173. http://dx.doi.org/10.1007/s001220050544 Talebi M, Kazemi M, Sayed-Tabatabaei BE, et al (2012). Molecular diversity and phylogenetic relationships of Pistacia vera, Pistacia atlantica subsp. mutica and Pistacia khinjuk using SRAP markers. Biochem. Syst. Ecol. 44: 179-185. http://dx.doi.org/10.1016/j.bse.2012.05.013 Vandemark GJ, Ariss JJ, Bauchan GA, Larsen RC, et al (2006). Estimating genetic relationships among historical sources of alfalfa germplasm and selected cultivars with sequence related amplified polymorphisms. Euphytica 152: 9-16. http://dx.doi.org/10.1007/s10681-006-9167-7 Yakubov B, Barazani O, Golan-Goldhirsh A, et al (2005). Combination of SCAR primers and touch-down PCR for sex identification in Pistacia vera L. Sci. Hortic. (Amsterdam) 103: 473-478. http://dx.doi.org/10.1016/j.scienta.2004.06.008 Yeh F, Yang R and Boyle T (1999). POPGENE Version 1.32. Microsoft Window-based Freeware for Population Genetic Analysis. Molecular Biology and Biotechnology Center, University of Alberta, Edmonton. Zhou Y, Wang X, Zhang X, et al (2011). Development and application of a SRAP marker for the identification of sex in Buchloe dactyloides. Euphytica 181: 261-266. http://dx.doi.org/10.1007/s10681-011-0419-9 Zohary M, et al (1952). A monographical study of genus Pistacia. Palestine J. Bot. Jerusalem Ser. 5: 187-228.    
K. Guenni, Aouadi, M., Chatti, K., Salhi-Hannachi, A., Guenni, K., Aouadi, M., Chatti, K., and Salhi-Hannachi, A., Analysis of genetic diversity of Tunisian pistachio (Pistacia vera L.) using sequence-related amplified polymorphism (SRAP) markers, vol. 15, no. 4, p. -, 2016.
Conflicts of interestThe authors declare no conflict of interest.ACKNOWLEDGMENTSThe authors would like to thank the Regional Commissions for Agricultural Development (CRDA), the officials of two experimental stations: Chenchou (Gabès) and Taous (Sfax), and the National Research Institute for Rural Engineering, Water and Forests (INRGREF) for carrying out sampling and for conducting this research project. Research supported by grants from the Tunisian Ministry of Higher Education, Scientific Research.REFERENCESAlghamdi SS, Al-Faifi SA, Migdadi HM, Khan MA, et al (2012). Molecular diversity assessment using sequence related amplified polymorphism (SRAP) markers in Vicia faba L. Int. J. Mol. Sci. 13: 16457-16471. http://dx.doi.org/10.3390/ijms131216457 Basha AI, Padulosi S, Chabane K, Hadj-hassan A, et al (2007). Genetic diversity of Syrian pistachio (Pistacia vera L.) varieties evaluated by AFLP markers. Genet. Resour. Crop Evol. 54: 1807-1816. http://dx.doi.org/10.1007/s10722-006-9202-5 Beaumont MA, Balding DJ, et al (2004). Identifying adaptive genetic divergence among populations from genome scans. Mol. Ecol. 13: 969-980. http://dx.doi.org/10.1111/j.1365-294X.2004.02125.x Botstein D, White RL, Skolnick M, Davis RW, et al (1980). Construction of a genetic linkage map in man using restriction fragment length polymorphisms. Am. J. Hum. Genet. 32: 314-331. Chaabouni AC, et al (2013). Capacité germinative et composition minérale du pollen de quelques génotypes mâles de pistachier (Pistacia vera L.). Revue des Régions Arides. 35: 329-335. Earl DA, vonHoldt BM, et al (2012). STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method. Conserv. Genet. Resour. 4: 359-361. http://dx.doi.org/10.1007/s12686-011-9548-7 Esfandiyari B, Davarynejad GH, Shahriari F, Kiani M, et al (2012). Data to the sex determination in Pistacia species using molecular markers. Euphytica 185: 227-231. http://dx.doi.org/10.1007/s10681-011-0527-6 Evanno G, Regnaut S, Goudet J, et al (2005). Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol. Ecol. 14: 2611-2620. http://dx.doi.org/10.1111/j.1365-294X.2005.02553.x Foll M, Gaggiotti O, et al (2008). A genome-scan method to identify selected loci appropriate for both dominant and codominant markers: a Bayesian perspective. Genetics 180: 977-993. http://dx.doi.org/10.1534/genetics.108.092221 Hammer Ø, Harper DAT, Ryan PD, et al (2001). PAST: Paleontological statistics software package for education and data analysis. Palaeontol. Electronica 4: 9. Hormaza JI, Dollo L, Polito VS, et al (1994). Identification of a RAPD marker linked to sex determination in Pistacia vera using bulked segregant analysis. Theor. Appl. Genet. 89: 9-13. http://dx.doi.org/10.1007/BF00226975 Jakobsson M, Rosenberg NA, et al (2007). CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure. Bioinformatics 23: 1801-1806. http://dx.doi.org/10.1093/bioinformatics/btm233 Jeffreys H (1961). Theory of Probability. In: Oxford Classic Texts in the Physical Sciences. Oxford University Press, Oxford, United Kingdom. Karp A, Kresovich S, Bhat KV, Ayad WG, et al. (1997). Molecular tools in plant genetic resources conservation: A guide to the technologies. IPGRI Technical Bulletin No. 2. International Plant Genetic Resources Institute, Rome, Italy. Krauss SL, Sinclair EA, Bussell JD, Hobbs RJ, et al (2013). An ecological genetic delineation of local seed-source provenance for ecological restoration. Ecol. Evol. 3: 2138-2149. http://dx.doi.org/10.1002/ece3.595 Li G, Quiros CF, et al (2001). Sequence-related amplified polymorphism (SRAP), a new marker system based on a simple PCR reaction: Its application to mapping and gene tagging in Brassica. Theor. Appl. Genet. 103: 455-461. http://dx.doi.org/10.1007/s001220100570 Li G, McVetty BE and Quiros CF (2013). SRAP Molecular Marker Technology in Plant Science. In: Plant Breeding from Laboratories to Fields (Andersen SV, eds.). Copenhagen University, Denmark. McDermott JM, McDonald BA, et al (1993). Gene flow in plant pathosystems. Annu. Rev. Phytopathol. 31: 353-373. http://dx.doi.org/10.1146/annurev.py.31.090193.002033 Mutlu N, Boyaci FH, Göçmen M, Abak K, et al (2008). Development of SRAP, SRAP-RGA, RAPD and SCAR markers linked with a Fusarium wilt resistance gene in eggplant. Theor. Appl. Genet. 117: 1303-1312. http://dx.doi.org/10.1007/s00122-008-0864-6 Nei M, et al (1973). Analysis of gene diversity in subdivided populations. Proc. Natl. Acad. Sci. USA 70: 3321-3323. http://dx.doi.org/10.1073/pnas.70.12.3321 Nei M, et al (1977). F-statistics and analysis of gene diversity in subdivided populations. Ann. Hum. Genet. 41: 225-233. http://dx.doi.org/10.1111/j.1469-1809.1977.tb01918.x Pazouki L, Mardi M, Shanjani PS, Hagidimitriou M, et al (2010). Genetic diversity and relationships among Pistacia species and cultivars. Conserv. Genet. 11: 311-318. http://dx.doi.org/10.1007/s10592-009-9812-5 Peakall R, Smouse PE, et al (2012). GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research--an update. Bioinformatics 28: 2537-2539. http://dx.doi.org/10.1093/bioinformatics/bts460 Perrier X and Jacquemoud-Collet JP (2006). DARwin Software. Available at [http://darwin.cirad.fr/darwin]. Poczai P, Varga I, Laos M, Cseh A, et al (2013). Advances in plant gene-targeted and functional markers: a review. Plant Methods 9: 6. http://dx.doi.org/10.1186/1746-4811-9-6 Prevost A, Wilkinson MJ, et al (1999). A new system of comparing PCR primers applied to ISSR fingerprinting of potato cultivars. Theor. Appl. Genet. 98: 107-112. http://dx.doi.org/10.1007/s001220051046 Pritchard JK, Stephens M, Donnelly P, et al (2000). Inference of population structure using multilocus genotype data. Genetics 155: 945-959. R Development Core Team (2013). R: A Language and Environment for Statistical Computing. Version 3.0.1. R Foundation for Statistical Computing, Vienna, Austria. Robarts DWH, Wolfe AD, et al (2014). Sequence-related amplified polymorphism (SRAP) markers: A potential resource for studies in plant molecular biology(1.). Appl. Plant Sci. 2: 1400017. http://dx.doi.org/10.3732/apps.1400017 Rosenberg NA, et al (2004). DISTRUCT: a program for the graphical display of population. Mol. Ecol. Notes 4: 137-138. http://dx.doi.org/10.1046/j.1471-8286.2003.00566.x Saha GC, Sarker A, Chen W, Vandemark GJ, et al (2010). Inheritance and Linkage Map Positions of Genes Conferring Resistance to Stemphylium Blight in Lentil. Crop Sci. 50: 1831-1839. http://dx.doi.org/10.2135/cropsci2009.12.0709 Sun Q, Yang X, Li R, et al (2014). SCAR marker for sex identification of Pistacia chinensis Bunge (Anacardiaceae). Genet. Mol. Res. 13: 1395-1401. http://dx.doi.org/10.4238/2014.February.28.12 Shanjani PS, Mardi M, Pazouki L, Hagidimitriou M, et al (2009). Analysis of the molecular variation between and within cultivated and wild Pistacia species using AFLPs. Tree Genet. Genomes 3: 447-458. http://dx.doi.org/10.1007/s11295-008-0198-1 Smith JSC, Chin ECL, Shu H, Smith OS, et al (1997). An evaluation of the utility of SSR loci as molecular markers in maize (Zea mays L.): comparisons with data from RFLPs and pedigree. Theor. Appl. Genet. 95: 163-173. http://dx.doi.org/10.1007/s001220050544 Talebi M, Kazemi M, Sayed-Tabatabaei BE, et al (2012). Molecular diversity and phylogenetic relationships of Pistacia vera, Pistacia atlantica subsp. mutica and Pistacia khinjuk using SRAP markers. Biochem. Syst. Ecol. 44: 179-185. http://dx.doi.org/10.1016/j.bse.2012.05.013 Vandemark GJ, Ariss JJ, Bauchan GA, Larsen RC, et al (2006). Estimating genetic relationships among historical sources of alfalfa germplasm and selected cultivars with sequence related amplified polymorphisms. Euphytica 152: 9-16. http://dx.doi.org/10.1007/s10681-006-9167-7 Yakubov B, Barazani O, Golan-Goldhirsh A, et al (2005). Combination of SCAR primers and touch-down PCR for sex identification in Pistacia vera L. Sci. Hortic. (Amsterdam) 103: 473-478. http://dx.doi.org/10.1016/j.scienta.2004.06.008 Yeh F, Yang R and Boyle T (1999). POPGENE Version 1.32. Microsoft Window-based Freeware for Population Genetic Analysis. Molecular Biology and Biotechnology Center, University of Alberta, Edmonton. Zhou Y, Wang X, Zhang X, et al (2011). Development and application of a SRAP marker for the identification of sex in Buchloe dactyloides. Euphytica 181: 261-266. http://dx.doi.org/10.1007/s10681-011-0419-9 Zohary M, et al (1952). A monographical study of genus Pistacia. Palestine J. Bot. Jerusalem Ser. 5: 187-228.