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2016
A. Mahjbi, Oueslati, A., Baraket, G., Salhi-Hannachi, A., S. Azouzi, Z., Mahjbi, A., Oueslati, A., Baraket, G., Salhi-Hannachi, A., and S. Azouzi, Z., Assessment of genetic diversity of Tunisian orange, Citrus sinensis (L.) Osbeck using microsatellite (SSR) markers, vol. 15, p. -, 2016.
A. Mahjbi, Oueslati, A., Baraket, G., Salhi-Hannachi, A., S. Azouzi, Z., Mahjbi, A., Oueslati, A., Baraket, G., Salhi-Hannachi, A., and S. Azouzi, Z., Assessment of genetic diversity of Tunisian orange, Citrus sinensis (L.) Osbeck using microsatellite (SSR) markers, vol. 15, p. -, 2016.
A. Abdessamad, Baraket, G., Sakka, H., Ammari, Y., Ksontini, M., and A. Hannachi, S., Chloroplast DNA analysis of Tunisian cork oak populations (Quercus suber L.): sequence variations and molecular evolution of the trnL (UAA)-trnF (GAA) region, vol. 15, no. 4, p. -, 2016.
Conflicts of interestThe authors declare no conflict of interest.ACKNOWLEDGMENTSResearch supported by grants from the Tunisian Ministère de l’Enseignement Supérieur et de la Recherche Scientifique. Funds provided for open-access publication were received from the National Institute of Research in Agricultural Engineering, Water and Forest, INRGREF, Tunis, Tunisia. REFERENCESAl-Qurainy F, Khan S, Al-Hemaid FM, Ali MA, et al (2011). Assessing molecular signature for some potential date (Phoenix dactylifera L.) cultivars from Saudi Arabia, based on chloroplast DNA sequences rpoB and psbA-trnH. Int. J. Mol. Sci. 12: 6871-6880. http://dx.doi.org/10.3390/ijms12106871 ANF (Inventário Florestal Nacional) (2006). Autoridade Nacional Florestal. Available at [http://www.afn.minagricultura.pt/portal/ifn]. Accessed May 27, 2011. Bakker FT, Culham A, Gomez-Martinez R, Carvalho J, et al (2000). Patterns of nucleotide substitution in angiosperm cpDNA trnL (UAA)-trnF (GAA) regions. Mol. Biol. Evol. 17: 1146-1155. http://dx.doi.org/10.1093/oxfordjournals.molbev.a026397 Baraket G, Ben Abdelkrim A, Chatti K, Saddoud O, et al (2010). Molecular evolution of chloroplast DNA in fig (Ficus carica L.): footprints of sweep selection and recent expansion. Biochem. Syst. Ecol. 38: 563-575. http://dx.doi.org/10.1016/j.bse.2010.06.011 Baraket G, Abdelkrim AB, Salhi-Hannachi A, et al (2015). tRNALeu intron (UAA) of Ficus carica L.: genetic diversity and evolutionary patterns. Genet. Mol. Res. 14: 3817-3832. http://dx.doi.org/10.4238/2015.April.22.11 Bernatzky R, Tanksley SD, et al (1986). Genetics of actin-related sequences in tomato. Theor. Appl. Genet. 72: 314-321. http://dx.doi.org/10.1007/BF00288567 Carrion-Vazquez M, Oberhauser AF, Fisher TE, Marszalek PE, et al (2000). Mechanical design of proteins studied by single-molecule force spectroscopy and protein engineering. Prog. Biophys. Mol. Biol. 74: 63-91. http://dx.doi.org/10.1016/S0079-6107(00)00017-1 Chen J, Tauer G, Huang Y, et al (2002). Paternal chloroplast inheritance patterns in pine hybrids detected with trnL-trnF intergenic region polymorphism. Theor. Appl. Genet. 104: 1307-1311. http://dx.doi.org/10.1007/s00122-002-0893-5 Cosimo SM, Papini A, Vessella F, Bellarosa R, et al (2009). Multiple genome relationships and a complex biogeographic history in the eastern range of Quercus suber L. (Fagaceae) implied by nuclear and chloroplast DNA variation. Caryologia 62: 236-252. Dumolin S, Demesure B, Petit RJ, et al (1995). Inheritance of chloroplast and mitochondrial genomes in pedunculate oak investigated with an efficient PCR method. Theor. Appl. Genet. 91: 1253-1256. http://dx.doi.org/10.1007/BF00220937 Fu YX, et al (1997). Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 147: 915-925. Fu YX, Li WH, et al (1993). Statistical tests of neutrality of mutations. Genetics 133: 693-709. Gielly L, Taberlet P, et al (1994). The use of chloroplast DNA to resolve plant phylogenies: noncoding versus rbcL sequences. Mol. Biol. Evol. 11: 769-777. Harpending HC, et al (1994). Signature of ancient population growth in a low-resolution mitochondrial DNA mismatch distribution. Hum. Biol. 66: 591-600. Jukes TH and Cantor CR (1969). Evolution of protein molecules. In: Mammalian Protein Metabolism (Munroled HN, ed.). Academy Press, New York, 31-132. Kampfer S, Lexer C, Glössl J, Steinkellner H, et al (1998). Characterization of (GA) n microsatellite loci from Quercus robur. Hereditas 129: 183-186. http://dx.doi.org/10.1111/j.1601-5223.1998.00183.x Lepais O, Leger V, Gerber S, et al (2006). Short note: high throughput microsatellite genotyping in oak species. Silvae Genet. 55: 238-240. Librado P, Rozas J, et al (2009). DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25: 1451-1452. http://dx.doi.org/10.1093/bioinformatics/btp187 Lumaret R, Tryphon-Dionnet M, Michaud H, Sanuy A, et al (2005). Phylogeographical variation of chloroplast DNA in cork oak (Quercus suber). Ann. Bot. (Lond.) 96: 853-861. http://dx.doi.org/10.1093/aob/mci237 Magri D, Fineschi S, Bellarosa R, Buonamici A, et al (2007). The distribution of Quercus suber chloroplast haplotypes matches the palaeogeographical history of the western Mediterranean. Mol. Ecol. 16: 5259-5266. http://dx.doi.org/10.1111/j.1365-294X.2007.03587.x Manen JF, Natali A, et al (1995). Comparison of the evolution of ribulose-1, 5-biphosphate carboxylase (rbcL) and atpB-rbcL noncoding spacer sequences in a recent plant group, the tribe Rubieae (Rubiaceae). J. Mol. Evol. 41: 920-927. http://dx.doi.org/10.1007/BF00173172 Mustapha SB, Ben Tamarzizt H, Baraket G, Abdallah D, et al (2015). Cytoplasmic polymorphism and evolutionary history of plum cultivars: Insights from chloroplast DNA sequence variation of trnL-trnF spacer and aggregated trnL intron & trnL-trnF spacer. Genet. Mol. Res. 14: 3964-3979. http://dx.doi.org/10.4238/2015.April.27.11 Nei M, Tajima F, et al (1983). Maximum likelihood estimation of the number of nucleotide substitutions from restriction sites data. Genetics 105: 207-217. Nei M and Kumar S (2000). Molecular Evolution and Phylogenetics. Oxford University Press, New York. Nixon KC, et al (1993). Infrageneric classification of Quercus (Fagaceae) and typification of section names. Ann. Sci. For. 50: 25-34. http://dx.doi.org/10.1051/forest:19930701 Olalde M, Herrán A, Espinel S, Goicoechea PG, et al (2002). White oaks phylogeography in the Iberian Peninsula. For. Ecol. Manage. 156: 89-102. http://dx.doi.org/10.1016/S0378-1127(01)00636-3 Paffetti D, Vettori C, Giannini R, et al (2001). Relict populations of Quercus culliprinos Webb on Sardinia island identified by chloroplast DNA sequences. For. Genet. 8: 1-11. Quang ND, Ikeda S, Harada K, et al (2008). Nucleotide variation in Quercus crispula Blume. Heredity (Edinb) 101: 166-174. http://dx.doi.org/10.1038/hdy.2008.42 Ramos-Onsins SE, Rozas J, et al (2002). Statistical properties of new neutrality tests against population growth. Mol. Biol. Evol. 19: 2092-2100. http://dx.doi.org/10.1093/oxfordjournals.molbev.a004034 Rogers AR, Harpending H, et al (1992). Population growth makes waves in the distribution of pairwise genetic differences. Mol. Biol. Evol. 9: 552-569. Sakka H, Baraket G, Dakhlaoui Dkhil S, Zehdi Azzouzi S, et al (2013). Chloroplast DNA analysis in Tunisian date-palm cultivars (Phoenix dactylifera L.): Sequence variations and molecular evolution of trnL (UAA) intron and trnL (UAA) trnF (GAA) intergenic spacer. Sci. Hortic. 164: 256-269. http://dx.doi.org/10.1016/j.scienta.2013.09.038 Taberlet P, Gielly L, Pautou G, Bouvet J, et al (1991). Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Mol. Biol. 17: 1105-1109. http://dx.doi.org/10.1007/BF00037152 Tajima F, et al (1989). Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123: 585-595. Takahara H (1998). Vegetation history of the Kinki district. In: Illustration: Vegetation History of the Japanese Archipelago (Yasuda Y and Miyoshi N, eds.). Asakura-Shoten, Tokyo, 114-134. Tamura K, Nei M, et al (1993). Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol. Biol. Evol. 10: 512-526. Tamura K, Nei M, Kumar S, et al (2004). Prospects for inferring very large phylogenies by using the neighbor-joining method. Proc. Natl. Acad. Sci. USA 101: 11030-11035. http://dx.doi.org/10.1073/pnas.0404206101 Tamura K, Peterson D, Peterson N, Stecher G, et al (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28: 2731-2739. http://dx.doi.org/10.1093/molbev/msr121 Tucker JM, et al (1974). Patterns of parallel evolution of leaf form in new world oaks. Taxon 23: 129-154. http://dx.doi.org/10.2307/1218095 Wachowiak W, Balk PA, Savolainen O, et al (2009). Search for nucleotide diversity patterns of local adaptation in dehydrins and other cold-related candidate genes in Scots pine (Pinus sylvetsris L.) Tree Genet. Genomes 5: 117-132. http://dx.doi.org/10.1007/s11295-008-0188-3 Zucca GM (2012). Molecular and phenotypic characterization of Quercus suber L. and Pinus uncinata R. populations in the Mediterranean basin. Doctoral thesis, Università degli Studi di Sassari, Sassari.  
2015
H. Ben Tamarzizt, Ben Mustapha, S., Baraket, G., Abdallah, D., and Salhi-Hannachi, A., Assessment of genetic diversity and relationships among wild and cultivated Tunisian plums (Prunus spp) using random amplified microsatellite polymorphism markers, vol. 14, pp. 1942-1956, 2015.
S. B. Mustapha, Ben Tamarzizt, H., Baraket, G., Abdallah, D., and Salhi-Hannachi, A., Cytoplasmic polymorphism and evolutionary history of plum cultivars: Insights from chloroplast DNA sequence variation of trnL-trnF spacer and aggregated trnL intron & trnL-trnF spacer, vol. 14, pp. 3964-3979, 2015.
H. Ben Tamarzizt, Walker, D., Ben Mustapha, S., Abdallah, D., Baraket, G., A. Hannachi, S., and S. Azzouzi, Z., DNA variation and polymorphism in Tunisian plum species (Prunus spp): contribution of flow cytometry and molecular markers, vol. 14, pp. 18034-18046, 2015.
S. Ben Mustapha, Ben Tamarzizt, H., Baraket, G., Abdallah, D., and A. Hannachi, S., Genetic diversity and differentiation in Prunus species (Rosaceae) using chloroplast and mitochondrial DNA CAPS markers, vol. 14, pp. 4177-4188, 2015.
B. M. Zarroug, Baraket, G., Zourgui, L., Souid, S., and A. Hannachi, S., Genetic diversity and phylogenetic relationship among Tunisian cactus species (Opuntia) as revealed by random amplified microsatellite polymorphism markers, vol. 14, pp. 1423-1433, 2015.
G. Baraket, Abdelkrim, A. B., and Salhi-Hannachi, A., tRNALeu intron (UAA) of Ficus carica L.: genetic diversity and evolutionary patterns, vol. 14, pp. 3817-3832, 2015.