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2012
C. S. Nascimento, Peixoto, J. O., Verardo, L. L., Campos, C. F., Weller, M. M. C., Faria, V. R., Botelho, M. E., Martins, M. F., Machado, M. A., Silva, F. F., Lopes, P. S., and Guimarães, S. E. F., Transcript profiling of expressed sequence tags from semimembranosus muscle of commercial and naturalized pig breeds, vol. 11, pp. 3315-3328, 2012.
Bai Q, McGillivray C, da CN, Dornan S, et al. (2003). Development of a porcine skeletal muscle cDNA microarray: analysis of differential transcript expression in phenotypically distinct muscles. BMC Genomics 4: 8. http://dx.doi.org/10.1186/1471-2164-4-8 PMid:12611633 PMCid:152649   Brandt U (2006). Energy converting NADH:quinone oxidoreductase (complex I). Annu. Rev. Biochem. 75: 69-92. http://dx.doi.org/10.1146/annurev.biochem.75.103004.142539 PMid:16756485   Briggs HM and Briggs DM (1969). In Modern Breeds of Livestock. The MacMillan Co., New York.   Conesa A, Gotz S, Garcia-Gomez JM, Terol J, et al. (2005). Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 21: 3674-3676. http://dx.doi.org/10.1093/bioinformatics/bti610 PMid:16081474   Davoli R, Zambonelli P, Bigi D, Fontanesi L, et al. (1999). Analysis of expressed sequence tags of porcine skeletal muscle. Gene 233: 181-188. http://dx.doi.org/10.1016/S0378-1119(99)00141-9   Davoli R, Fontanesi L, Zambonelli P, Bigi D, et al. (2002). Isolation of porcine expressed sequence tags for the construction of a first genomic transcript map of the skeletal muscle in pig. Anim. Genet. 33: 3-18. http://dx.doi.org/10.1046/j.1365-2052.2002.00800.x PMid:11849132   Ewing B, Hillier L, Wendl MC and Green P (1998). Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res. 8: 175-185. PMid:9521921   Ferraz AL, Ojeda A, Lopez-Bejar M, Fernandes LT, et al. (2008). Transcriptome architecture across tissues in the pig. BMC Genomics 9: 173. http://dx.doi.org/10.1186/1471-2164-9-173 PMid:18416811 PMCid:2335121   Guimarães SEF and Lopes OS (2001). Uso de recursos genéticos nativos no mapeamento genético de suínos. Ação Ambiental 15: 27-28.   Hocquette JF, Ortigues-Marty I and Pethick D (1998). Nutritional and hormonal regulation of energy metabolism in skeletal muscles of meat-producing animals. Livest. Prod. Sci. 56: 115-143. http://dx.doi.org/10.1016/S0301-6226(98)00187-0   Huang X and Madan A (1999). CAP3: A DNA sequence assembly program. Genome Res. 9: 868-877. http://dx.doi.org/10.1101/gr.9.9.868 PMid:10508846 PMCid:310812   Kim NK, Lim JH and Song MJ (2008). Comparisons of longissimus muscle metabolic enzymes and muscle fibre types in Korean and western pig breeds. Meat Sci. 78: 455-460. http://dx.doi.org/10.1016/j.meatsci.2007.07.014 PMid:22062465   Lin CS and Hsu CW (2005). Differentially transcribed genes in skeletal muscle of Duroc and Taoyuan pigs. J. Anim. Sci. 83: 2075-2086. PMid:16100062   Lopes PS, Guimarães SEF, Pires AV, Soares MAM, et al. (2002). Performance, Carcass Yield and Meat Quality Traits of F2 Crosses Between Brazilian Native and Commercial Pigs for QTL Mapping. Proceedings in World Congresss on Genetics Applied to Livestock Production: Montpellier, 155-158.   Mégy K, Audic S and Claverie JM (2002). Heart-specific genes revealed by expressed sequence tag (EST) sampling. Genome Biol. 3: RESEARCH0074.   Min XJ, Butler G, Storms R and Tsang A (2005). TargetIdentifier: a webserver for identifying full-length cDNAs from EST sequences. Nucleic Acids Res. 33: W669-W672. http://dx.doi.org/10.1093/nar/gki436 PMid:15980559 PMCid:1160197   Nobis W, Ren X, Suchyta SP, Suchyta TR, et al. (2003). Development of a porcine brain cDNA library, EST database, and microarray resource. Physiol. Genomics 16: 153-159. http://dx.doi.org/10.1152/physiolgenomics.00099.2003 PMid:14559975   Rehfeldt C, Henning M and Fiedler I (2008). Consequences of pig domestication for skeletal muscle growth and cellularity. Livest. Sci. 116: 30-41. http://dx.doi.org/10.1016/j.livsci.2007.08.017   Sambrook J and Russell DW (2001). Molecular Cloning. A Laboratory Manual. Cold Spring Harbor Press, Cold Spring Harbor.   Serão NV, Veroneze R, Ribeiro AM, Verardo LL, et al. (2011). Candidate gene expression and intramuscular fat content in pigs. J. Anim. Breed. Genet. 128: 28-34. http://dx.doi.org/10.1111/j.1439-0388.2010.00887.x PMid:21214641   Souza CA, Paiva SR, Pereira RW, Guimaraes SE, et al. (2009). Iberian origin of Brazilian local pig breeds based on Cytochrome b (MT-CYB) sequence. Anim. Genet. 40: 759-762. http://dx.doi.org/10.1111/j.1365-2052.2009.01899.x PMid:19422368   Tang Z, Li Y, Wan P, Li X, et al. (2007). LongSAGE analysis of skeletal muscle at three prenatal stages in Tongcheng and Landrace pigs. Genome Biol. 8: R115. http://dx.doi.org/10.1186/gb-2007-8-6-r115 PMid:17573972 PMCid:2394763   Vianna AT (1985). Os Suínos. 14ª ed. Editora Nobel, São Paulo.   Wang XL, Wu KL, Li N, Li CL, et al. (2006). Analysis of expressed sequence tags from skeletal muscle-specific cDNA library of Chinese native Xiang pig. Yi Chuan Xue Bao 33: 984-991. PMid:17112969   Wimmers K, Ngu NT, Jennen DG, Tesfaye D, et al. (2008). Relationship between myosin heavy chain isoform expression and muscling in several diverse pig breeds. J. Anim. Sci. 86: 795-803. http://dx.doi.org/10.2527/jas.2006-521 PMid:18156349   Wu J, Zhou D, Deng C, Wu X, et al. (2008). Characterization of porcine ENO3: genomic and cDNA structure, polymorphism and expression. Genet. Sel. Evol. 40: 563-579. PMid:18694551 PMCid:2674891
2011
C. S. Nascimento, Machado, M. A., Guimarães, S. E. F., Martins, M. F., Peixoto, J. O., Furlong, J., Prata, M. C. A., Verneque, R. S., Teodoro, R. L., and Lopes, P. S., Expressed sequenced tags profiling of resistant and susceptible Gyr x Holstein cattle infested with the tick Rhipicephalus (Boophilus) microplus, vol. 10, pp. 3803-3816, 2011.
Adachi W, Kawamoto S, Ohno I, Nishida K, et al. (1998). Isolation and characterization of human cathepsin V: a major proteinase in corneal epithelium. Invest. Ophthalmol. Vis. Sci. 39: 1789-1796. PMid:9727401 Altschul SF, Madden TL, Schaffer AA, Zhang J, et al. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25: 3389-3402. http://dx.doi.org/10.1093/nar/25.17.3389 PMid:9254694 PMCid:146917 Band MR, Larson JH, Rebeiz M, Green CA, et al. (2000). An ordered comparative map of the cattle and human genomes. Genome Res. 10: 1359-1368. http://dx.doi.org/10.1101/gr.145900 PMid:10984454 PMCid:310912 Birnboim HC and Doly J (1979). A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucleic Acids Res. 7: 1513-1523. http://dx.doi.org/10.1093/nar/7.6.1513 PMid:388356 PMCid:342324 Boldman KG, Kriese LA and Van Vleck LD (1995). A Manual for Use of MTDFREML. A Set of Programs to Obtain Estimates of Variances and Covariances. Department of Agriculture/Agricultural Research Service U.S. USDA-ARS, Lincoln. Causton HC, Ren B, Koh SS, Harbison CT, et al. (2001). Remodeling of yeast genome expression in response to environmental changes. Mol. Biol. Cell 12: 323-337. PMid:11179418 PMCid:30946 Colige A, Ruggiero F, Vandenberghe I, Dubail J, et al. (2005). Domains and maturation processes that regulate the activity of ADAMTS-2, a metalloproteinase cleaving the aminopropeptide of fibrillar procollagens types I-III and V. J. Biol. Chem. 280: 34397-34408. http://dx.doi.org/10.1074/jbc.M506458200 PMid:16046392 Conesa A, Gotz S, Garcia-Gomez JM, Terol J, et al. (2005). Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 21: 3674-3676. http://dx.doi.org/10.1093/bioinformatics/bti610 PMid:16081474 Dean MD, Clark NL, Findlay GD, Karn RC, et al. (2009). Proteomics and comparative genomic investigations reveal heterogeneity in evolutionary rate of male reproductive proteins in mice (Mus domesticus). Mol. Biol. Evol. 26: 1733-1743. http://dx.doi.org/10.1093/molbev/msp094 PMid:19420050 PMCid:2734151 Doudna JA and Rath VL (2002). Structure and function of the eukaryotic ribosome: the next frontier. Cell 109: 153-156. http://dx.doi.org/10.1016/S0092-8674(02)00725-0 Douglas SE, Gallant JW, Bullerwell CE, Wolff C, et al. (1999). Winter flounder expressed sequence tags: Establishment of an EST database and identification of novel fish genes. Mar. Biotechnol. 1: 458-0464. http://dx.doi.org/10.1007/PL00011802 Ewing B, Hillier L, Wendl MC and Green P (1998). Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res. 8: 175-185. PMid:9521921 Gill JL, Ericsson GF and Helland IS (1986). Precision of assessing anthelmintic efficacy. Biometrics 42: 981-987. http://dx.doi.org/10.2307/2530714 PMid:3814739 Gumbiner BM (1993). Breaking through the tight junction barrier. J. Cell Biol. 123: 1631-1633. http://dx.doi.org/10.1083/jcb.123.6.1631 PMid:8276885 Hale LP, Patel DD, Clark RE and Haynes BF (1995). Distribution of CD44 variant isoforms in human skin: differential expression in components of benign and malignant epithelia. J. Cutan. Pathol. 22: 536-545. http://dx.doi.org/10.1111/j.1600-0560.1995.tb01148.x PMid:8835172 Huang X and Madan A (1999). CAP3: A DNA sequence assembly program. Genome Res. 9: 868-877. http://dx.doi.org/10.1101/gr.9.9.868 PMid:10508846 PMCid:310812 Itoh T, Watanabe T, Ihara N, Mariani P, et al. (2005). A comprehensive radiation hybrid map of the bovine genome comprising 5593 loci. Genomics 85: 413-424. http://dx.doi.org/10.1016/j.ygeno.2004.12.007 PMid:15780744 Machado MA, Azevedo AL, Teodoro RL, Pires MA, et al. (2010). Genome wide scan for quantitative trait loci affecting tick resistance in cattle (Bos taurus x Bos indicus). BMC Genom. 11: 280. http://dx.doi.org/10.1186/1471-2164-11-280 PMid:20433753 PMCid:2880304 Martinez ML, Machado MA, Nascimento CS, Silva MV, et al. (2006). Association of BoLA-DRB3.2 alleles with tick (Boophilus microplus) resistance in cattle. Genet. Mol. Res. 5: 513-524. PMid:17117367 Metzelaar MJ, Wijngaard PL, Peters PJ, Sixma JJ, et al. (1991). CD63 antigen. A novel lysosomal membrane glycoprotein, cloned by a screening procedure for intracellular antigens in eukaryotic cells. J. Biol. Chem. 266: 3239-3245. PMid:1993697 Sambrook J and Russel DW (2001). Molecular Cloning. A Laboratory Manual. 3rd edn. Cold Spring Harbor Laboratory, Cold Spring Harbor. Smothers CD, Sun F and Dayton AD (1999). Comparison of arithmetic and geometric means as measures of a central tendency in cattle nematode populations. Vet. Parasitol. 81: 211-224. http://dx.doi.org/10.1016/S0304-4017(98)00206-4 Villares JB (1941). Climatologia Zootecnica III: Contribuição ao Estudo de Resistência e Susceptibilidade Genética dos Bovinos ao Boophilus microplus. In: Boletim da Indústria Animal: 8-9 July 1941, Edited by Nova Serie, São Paulo. Wang YH, Reverter A, Kemp D and McWilliam SM (2007). Gene expression profiling of Hereford Shorthorn cattle following challenge with Boophilus microplus tick larvae. Aust. J. Exp. Agr. 47: 1397-1407. http://dx.doi.org/10.1071/EA07012 Westfall PH and Young SS (1993). Resampling-Based Multiple Testing: Examples and Methods for P-Value Adjustment. John Wiley & Sons, Inc., New York. Wharton RH and Utech KBW (1970). The relation between engorgement and dropping of Boophilus microplus (Canestrini) (Ixodidae) to the assessment of tick numbers on cattle. 171. Wilkinson PR (1962). Selection of cattle for tick resistance, and the effect of herds of different susceptibility on Boophilus populations. Aust. J. Agr. Res. 13: 974-983. http://dx.doi.org/10.1071/AR9620974 Willadsen P and Jongejan F (1999). Immunology of the tick-host interaction and the control of ticks and tick-borne diseases. Parasitol. Today 15: 258-262. http://dx.doi.org/10.1016/S0169-4758(99)01472-6 Wind AE, Larkin DM, Green CA and Elliott JS (2005). A high-resolution whole-genome cattle-human comparative map reveals details of mammalian chromosome evolution. Proc. Nat. Acad. Sci. U. S. A. 102: 18526-18531. http://dx.doi.org/10.1073/pnas.0509285102 PMid:16339895 PMCid:1317968 Wool IG (1996). Extraribosomal functions of ribosomal proteins. Trends Biochem. Sci. 21: 164-165. PMid:8871397
2010
C. S. Nascimento, Machado, M. A., Guimarães, S. E. F., Guimarães, M. F. M., Peixoto, J. O., Furlong, J., Prata, M. C. A., Verneque, R. S., Teodoro, R. L., and Lopes, P. S., Differential expression of genes in resistant versus susceptible Gyr x Holstein cattle challenged with the tick Rhipicephalus (Boophilus) microplus, vol. 9. pp. 1974-1979, 2010.
Bobek LA and Levine MJ (1992). Cystatins-inhibitors of cysteine proteinases. Crit. Rev. Oral Biol. Med. 3: 307-332. PMid:1391414   Heiner I, Eisfeld J and Luckhoff A (2003). Role and regulation of TRP channels in neutrophil granulocytes. Cell Calcium 33: 533-540. http://dx.doi.org/10.1016/S0143-4160(03)00058-7   Jansen BJ, van Ruissen F, de Jongh G, Zeeuwen PL, et al. (2001). Serial analysis of gene expression in differentiated cultures of human epidermal keratinocytes. J. Invest. Dermatol. 116: 12-22. http://dx.doi.org/10.1046/j.1523-1747.2001.00218.x PMid:11168793   Kotsyfakis M, Sá-Nunes A, Francischetti IM, Mather TN, et al. (2006). Antiinflammatory and immunosuppressive activity of sialostatin L, a salivary cystatin from the tick Ixodes scapularis. J. Biol. Chem. 281: 26298-26307. http://dx.doi.org/10.1074/jbc.M513010200 PMid:16772304   Montell C, Birnbaumer L and Flockerzi V (2002). The TRP channels, a remarkably functional family. Cell 108: 595-598. http://dx.doi.org/10.1016/S0092-8674(02)00670-0   Paesen GC, Adams PL, Nuttall PA and Stuart DL (2000). Tick histamine-binding proteins: lipocalins with a second binding cavity. Biochim. Biophys. Acta 1482: 92-101. http://dx.doi.org/10.1016/S0167-4838(00)00168-0   Pfaffl MW (2001). A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res. 29: e45. http://dx.doi.org/10.1093/nar/29.9.e45 PMid:11328886 PMCid:55695   Pfaffl MW, Horgan GW and Dempfle L (2002). Relative expression software tool (REST) for group-wise comparison and statistical analysis of relative expression results in real-time PCR. Nucleic Acids Res. 30: e36. http://dx.doi.org/10.1093/nar/30.9.e36 PMid:11972351 PMCid:113859   Teodoro RL, Pires MFA, Furlong J, Prata MCA, et al (2006). Estimativas de Parâmetros Genéticos e Fenotípicos para a Resistência a Carrapatos e Bernes em uma População Experimental F2 Holandês x Gir. In: Anais da 43a. Reunião Anual da Sociedade Brasileira de Zootecnia (SBZ, ed.), João Pessoa. (CD ROM).   Utech KBW, Seifert GW and Wharton RH (1978). Breeding Australian lllawarra Shorthorn cattle for resistance to Boophilus microplus. I. Factors affecting resistance. Aust. J. Agric. Res. 29: 411-422. http://dx.doi.org/10.1071/AR9780411   Villares JB (1941). Climatologia Zootécnica. III. Contribuição ao Estudo de Resistência e Susceptibilidade Genética dos Bovinos ao Boophilus microplus. In: Boletim da Indústria Animal. Nova Série, São Paulo, 4: 60-86.