Transcriptome

Development and characterization of novel SSR markers in Siniperca kneri Garman

M. Yang, Zheng, H. Z., Liang, X. - F., Tian, C. X., Dou, Y. Q., Zhu, K. C., and Yuan, Y. C., Development and characterization of novel SSR markers in Siniperca kneri Garman, vol. 13, pp. 7593-7606, 2014.

In this study, 37 transcriptome-derived simple sequence repeat (SSR) markers and 18 genomic SSR markers were developed and characterized in the Chinese perch, Siniperca kneri Garman. The average allele number per locus was 5.1 (range: 2-8) for transcriptome-derived SSRs and 3.8 (range: 2-5) for genomic SSRs. The average observed and expected heterozygosities were 0.666 (range: 0.000-1.000) and 0.692 (range: 0.230-0.857) for transcriptome-derived SSRs, respectively. These values were 0.380 (range: 0.000-1.000) and 0.527 (range: 0.201-0.799) for genomic SSRs, respectively.

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