Pathway

Deep RNA sequencing elucidates microRNA-regulated molecular pathways in ischemic cardiomyopathy and nonischemic cardiomyopathy

X. Li, Liu, C. Y., Li, Y. S., Xu, J., Li, D. G., Han, D., Li, X., Liu, C. Y., Li, Y. S., Xu, J., Li, D. G., Han, D., Li, X., Liu, C. Y., Li, Y. S., Xu, J., Li, D. G., and Han, D., “Deep RNA sequencing elucidates microRNA-regulated molecular pathways in ischemic cardiomyopathy and nonischemic cardiomyopathy”, vol. 15, p. -, 2016.

Deregulation of cardiac miRNA gene-regulatory networks is a feature of different heart diseases, including ischemic (ICM) and nonischemic (NICM) cardiomyopathy. Here, based on the paired miRNA and mRNA expression profiles in ICM and NICM, we identified the differentially expressed miRNAs and mRNAs and the expression signatures distinguishing ICM/NICM from control samples. Furthermore, we constructed a functional miRNA network for each disease.

Identification of hub genes and pathways associated with retinoblastoma based on co-expression network analysis

Q. L. Wang, Chen, X., Zhang, M. H., Shen, Q. H., and Qin, Z. M., “Identification of hub genes and pathways associated with retinoblastoma based on co-expression network analysis”, vol. 14, pp. 16151-16161, 2015.

The objective of this paper was to identify hub genes and pathways associated with retinoblastoma using centrality analysis of the co-expression network and pathway-enrichment analysis. The co-expression network of retinoblastoma was constructed by weighted gene co-expression network analysis (WGCNA) based on differentially expressed (DE) genes, and clusters were obtained through the molecular complex detection (MCODE) algorithm. Degree centrality analysis of the co-expression network was performed to explore hub genes present in retinoblastoma.

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