Next-generation sequencing

A repetitive sequence assembler based on next-generation sequencing

S. Lian, Tu, Y., Wang, Y., Chen, X., Wang, L., Lian, S., Tu, Y., Wang, Y., Chen, X., and Wang, L., A repetitive sequence assembler based on next-generation sequencing, vol. 15, p. -, 2016.

Repetitive sequences of variable length are common in almost all eukaryotic genomes, and most of them are presumed to have important biomedical functions and can cause genomic instability. Next-generation sequencing (NGS) technologies provide the possibility of identifying capturing these repetitive sequences directly from the NGS data. In this study, we assessed the performances in identifying capturing repeats of leading assemblers, such as Velvet, SOAPdenovo, SGA, MSR-CA, Bambus2, ALLPATHS-LG, and AByss using three real NGS datasets.

Analysis of ‘Fuji’ apple somatic variants from next-generation sequencing

H. S. Lee, Kim, G. H., Kwon, S. I., Kim, J. H., Kwon, Y. S., Choi, C., Lee, H. S., Kim, G. H., Kwon, S. I., Kim, J. H., Kwon, Y. S., and Choi, C., Analysis of ‘Fuji’ apple somatic variants from next-generation sequencing, vol. 15, p. -, 2016.

The domesticated apple (Malus x domestica Borkh.) is a major fruit crop of temperate regions of the world. ‘Fuji’ apple (Ralls Genet x Delicious), a famous apple cultivar in Korea, has been very popular since its promotion in Japan in 1958. ‘Fuji’ and its bud mutant cultivars possess variable levels of genetic diversity. Nonetheless, the phenotypes of each group, which are classified into the bud mutation groups: early season, fruiting spur, and coloring, are similar.

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