Human host

Mapping codon usage in sequence regions flanking cleavage positions in the hepatitis A virus polyprotein

X. - X. Ma, Feng, Y. - P., Chen, L., Zhao, Y. - Q., Liu, J. - L., Guo, J. - Z., Guo, P. - H., Yang, J. - T., Lu, J. - X., Chen, S. - E., and Ma, Z. - R., Mapping codon usage in sequence regions flanking cleavage positions in the hepatitis A virus polyprotein, vol. 12, pp. 2306-2319, 2013.

To analyze the synonymous codon usage patterns of sequence regions flanking cleavage sites in the hepatitis A virus (HAV) polyprotein, the codon usage bias at codon positions and the synonymous codon usage in the target contexts of 30 virus strains were estimated by two simple methods that were based on the values for relative synonymous codon usage. In addition, the pattern of synonymous codon usage was compared between the genomic sequences in HAV and those of its human host.

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