Effective population size

Inverted migration of rare whisker sheatfish in Nong-Han Lake, northeastern Thailand: Implications for conservation

P. Phongkaew, Arunyawat, U., Swatdipong, A., and Hongtrakul, V., Inverted migration of rare whisker sheatfish in Nong-Han Lake, northeastern Thailand: Implications for conservation, vol. 13, pp. 7492-7502, 2014.

Nong-Han Lake, Thailand, sustains the whisker sheatfish (Micronema bleekeri Günther, 1864), which is a rare species of freshwater catfish. Wild-caught whisker sheatfish has been intensively harvested to meet market demand; yet, genetic information about this species remains unknown. To assist with the in situ conservation of whisker sheatfish populations in Nong-Han Lake, 35 and 34 individuals from the middle (MN) and lower (LN) areas of the lake, respectively, were studied using 7 microsatellite loci.

In-depth pedigree analysis in a large Brazilian Nellore herd

F. V. Brito, Sargolzaei, M., J. Neto, B., Cobuci, J. A., Pimentel, C. M., Barcellos, J., and Schenkel, F. S., In-depth pedigree analysis in a large Brazilian Nellore herd, vol. 12, pp. 5758-5765, 2013.

A large herd of Nellore cattle was evaluated using in-depth pedigree analyses. Taking into account the incomplete pedigree due to the use of multiple young sires for mating, the average inbreeding coefficient was calculated as 1.73% for the last generation, which was higher than the regular inbreeding coefficient (0.25%). The effective population size was estimated to be 114, 245, and 101 for the time periods 1995-1999, 1999-2003, and 2003-2007, respectively. Parameters based on the probability of gene origin were used to describe the genetic diversity over time in the herd.

POPREP: a generic report for population management

E. Groeneveld, Westhuizen, Bv.d., Maiwashe, A., Voordewind, F., and Ferraz, J. B. S., POPREP: a generic report for population management, vol. 8, pp. 1158-1178, 2009.

Genetic variation provides a basis upon which populations can be genetically improved. Management of animal genetic resources in order to minimize loss of genetic diversity both within and across breeds has recently received attention at different levels, e.g., breed, national and international levels. A major need for sustainable improvement and conservation programs is accurate estimates of population parameters, such as rate of inbreeding and effective population size. A software system (POPREP) is presented that automatically generates a typeset report.

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